Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0620
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306... 93 1e-19
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 54 6e-08
03_05_0299 + 22887603-22887797,22887891-22887986,22888089-228881... 46 1e-05
04_03_0439 + 15937934-15938167,15938276-15938476,15938852-159389... 44 6e-05
04_03_0438 + 15929220-15929453,15929564-15929764,15930874-159310... 42 3e-04
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770... 42 3e-04
04_03_0447 + 16015043-16015489,16017358-16017530,16017906-160180... 42 3e-04
04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911 39 0.002
04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051... 33 0.12
09_03_0022 + 11610691-11610760,11611153-11611564,11613581-11614109 31 0.37
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502... 31 0.64
09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433 29 2.0
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 27 7.9
04_03_0095 + 11114971-11115939,11115954-11116556 27 7.9
>12_02_0351 -
17829874-17830005,17830250-17830267,17830544-17830672,
17831037-17831336,17831447-17831675,17831762-17831989,
17832380-17832645
Length = 433
Score = 92.7 bits (220), Expect = 1e-19
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Frame = +3
Query: 3 NMRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQG 182
+M ELG TG++VS + G++ +++G + ++ +L+LGIN+ +T P+YG
Sbjct: 111 DMELRELGATGLRVSPVGFGASPLGHVFGDVPRDVARAAVRRALDLGINFFDTSPYYGGT 170
Query: 183 SSEKDIGKAL--VGVPRDSXYIGSXVAATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDYV 356
SE +G L GVPRD + + FDFSA + DYV
Sbjct: 171 VSESVLGDCLRAAGVPRDRFVVATKCGRYREG----FDFSAARVTRSVDESLARLGLDYV 226
Query: 357 DLIQVHDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
D++ HDI F D + ET+PVL+ ARFIG
Sbjct: 227 DILHCHDIEFT-DLDQIVNETIPVLQKIKESGKARFIG 263
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 54.0 bits (124), Expect = 6e-08
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Frame = +3
Query: 18 ELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQGSSEK 194
+LGT G++VS + G + +Y E+ + +++ + G+ + +T YG ++E
Sbjct: 10 KLGTQGLEVSKLGFGCMGLTGVYNAPVAEEDGVAVVRRAFEAGVTFFDTSDAYGPHTNEV 69
Query: 195 DIGKALVGVPRDSXYIGSXVA-ATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDYVDLIQV 371
+GKAL +PR+ + + A + + + + DY+DL
Sbjct: 70 LLGKALKQLPREKVQVATKFGIAGFDANGMLVKGTPDYVRACCEASLERLAVDYIDLYYQ 129
Query: 372 HDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
H I D SV ++ET+ L+ V +F+G
Sbjct: 130 HRI----DQSVPIEETMGELKKLVEEGKVKFVG 158
>03_05_0299 +
22887603-22887797,22887891-22887986,22888089-22888172,
22888573-22888733,22889458-22889575,22889914-22890049,
22890351-22890529,22890690-22890929
Length = 402
Score = 46.4 bits (105), Expect = 1e-05
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Frame = +3
Query: 6 MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYG--- 176
M+Y +LG + + +S +++G+ F + EK + +++ S + G+N L+T Y
Sbjct: 46 MQYRKLGDSDLVISEVTLGTMTFGE---QNTEKEAHDILSYSFDQGVNILDTAEMYPVPP 102
Query: 177 ----QGSSEKDIGKALVGVPRDSXYIGSXVAA-TTRSTL-----KMFDFSAEKXXXXXXX 326
QG ++ IG + PRD + + V+ + RST K+ A
Sbjct: 103 RKETQGRTDLYIGSWMQSKPRDKIILATKVSGYSERSTFLRDNAKVVRVDAANIKESVEK 162
Query: 327 XXXXXXXDYVDLIQVH 374
DY+DL+Q+H
Sbjct: 163 SLSRLSTDYIDLLQIH 178
>04_03_0439 +
15937934-15938167,15938276-15938476,15938852-15938911,
15939896-15939958,15940822-15940848,15941020-15941358
Length = 307
Score = 44.0 bits (99), Expect = 6e-05
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +3
Query: 6 MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 182
+R +LG+ G++VS +G S YG E + LI ++ G+ +L+T YG
Sbjct: 11 VRRMKLGSQGLEVSAQGLGCMGMSAFYGPPKPEADMVALIHHAVAAGVTHLDTSDMYGPH 70
Query: 183 SSEKDIGKALVGVPRDSXYIGSXVAAT 263
++E +GKAL G R+ + + A +
Sbjct: 71 TNELLLGKALQGGVREKVEVATKFAVS 97
>04_03_0438 +
15929220-15929453,15929564-15929764,15930874-15931046,
15931131-15931233,15931763-15932107
Length = 351
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 6 MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 182
+R +LG+ G++VS +G S YG E + LI ++ G+ L+T YG
Sbjct: 11 VRRMKLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMVALIHHAVAAGVTLLDTSDIYGPH 70
Query: 183 SSEKDIGKALVGVPRD 230
++E +GKAL G RD
Sbjct: 71 TNELLLGKALQGGVRD 86
>01_05_0718 -
24575946-24576121,24576721-24576874,24576964-24577060,
24577142-24577314,24577426-24577629,24577725-24577892,
24577938-24578084
Length = 372
Score = 41.9 bits (94), Expect = 3e-04
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
Frame = +3
Query: 36 IKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQGSSEKDIGKAL 212
+ VS + G + Y D+ +I + G+ + +T YG ++E +GKAL
Sbjct: 48 VTVSKLGFGCMGLTGAYNSPLDDDAGAAVIAHAFRRGVTFFDTSDVYGPLANEILLGKAL 107
Query: 213 VGVPRDSXYIGSXVAATTRST-LKMFDFSAEKXXXXXXXXXXXXXXDYVDLIQVHDITFA 389
+PR+ + + + ++ E DY+DL H +
Sbjct: 108 KQLPREQVQVATKFGIRRGADGVRAVCGRPEYVRACCEASLGRLGVDYIDLYYQHRV--- 164
Query: 390 PDTSVXLKETLPVLEXXVRVXXARFIG 470
DT++ +++T+ L+ V R+IG
Sbjct: 165 -DTTIPIEDTIGELKKLVEEGKVRYIG 190
>04_03_0447 +
16015043-16015489,16017358-16017530,16017906-16018008,
16018177-16018521
Length = 355
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 MRYNELGTTGIKVSHISVGSAAFSNIYG-KYDEKRSLELIKESLNLGINYLETGPWYGQG 182
+R +LG+ G++VS +G S +YG + E + L++ ++ G+ +L+T YG
Sbjct: 14 VRRMKLGSQGMEVSAQGLGCMGMSAVYGERKPEADMVALVRHAVAAGVTFLDTSDVYGPH 73
Query: 183 SSEKDIGKAL 212
++E +GKA+
Sbjct: 74 TNEVLVGKAV 83
>04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911
Length = 178
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 6 MRYNELGTTGIKVSHISVGSAAFSNIYG-KYDEKRSLELIKESLNLGINYLETGPWYGQG 182
+R +LG+ G++VS +G S +G E + LI ++ G+ L+T YG
Sbjct: 11 VRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPH 70
Query: 183 SSEKDIGKAL-VGVPRDS 233
++E +GKAL VG RD+
Sbjct: 71 ANEALLGKALQVGSVRDN 88
>04_03_0435 +
15902356-15902574,15902680-15902777,15905100-15905163,
15906707-15907045
Length = 239
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 18 ELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQGSSEK 194
+LG+ G++VS +G + E + LI+ ++ G+ + +T YG ++E
Sbjct: 10 KLGSQGMEVSAQGLGCMGMCPAFEPPKPEADMVALIRHAIAAGVTFFDTSDLYGPHTNEV 69
Query: 195 DIGKALVG 218
+GKAL G
Sbjct: 70 LLGKALQG 77
>09_03_0022 + 11610691-11610760,11611153-11611564,11613581-11614109
Length = 336
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 81 IYGKYDEKRSLELIKESLNLGINYLET 161
+YG YD K S ++ L+LG+NY +T
Sbjct: 73 VYGNYDGKNSSSTLQFDLHLGVNYWKT 99
>09_02_0587 -
10948888-10949124,10949281-10949393,10949830-10950293,
10951223-10951766,10951902-10951971
Length = 475
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 84 YGKYDEKRSLELIKESLNLGINYLET--GPW 170
YG YD K S I+ L LG+NY T PW
Sbjct: 108 YGNYDGKNSSSTIQFDLYLGVNYWATVKDPW 138
>09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433
Length = 210
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 84 YGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKDIGKAL 212
YG YD K S ++ L+LG NY +T Q S K + +AL
Sbjct: 107 YGNYDGKNSSSSLQFDLHLGSNYWDT----VQAGSTKQVYEAL 145
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 59 WKCRFQQYLWEI*REKKPGAH-*RKLESRYQLSGNRTLVRS 178
WK RF QY+W+ + K A +L+ + ++ N T RS
Sbjct: 313 WKFRFPQYVWQYKKHKLSNAQKIARLKDQLRVEHNPTQRRS 353
>04_03_0095 + 11114971-11115939,11115954-11116556
Length = 523
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 120 IKESLNLGINYLETGPWYGQGSSEKDIGKALVGVPR 227
+ ES+NL + LET G G+S +DI + + G PR
Sbjct: 219 VPESINLPL--LETMRLTGPGNSGRDIQRLISGCPR 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,499
Number of Sequences: 37544
Number of extensions: 202610
Number of successful extensions: 439
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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