Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0620
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_42786| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_53914| Best HMM Match : K167R (HMM E-Value=3.1)                     27   8.0  

>SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 29/43 (67%)
 Frame = +3

Query: 78  NIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKDIGK 206
           +++ +  E+ S++++  +L  GINY++T PWYG   SE  +GK
Sbjct: 59  SVFRETREEESIQVVHHALKSGINYIDTAPWYGHNKSEMVLGK 101


>SB_42786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 87  GKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKDIGKAL 212
           GKY+   ++ L    +   I  L  G    Q SS+KD GK L
Sbjct: 185 GKYERAAAIALFNSKIRQAIEILRQGAKVNQESSDKDKGKTL 226


>SB_53914| Best HMM Match : K167R (HMM E-Value=3.1)
          Length = 366

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 72  FSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKDIGK 206
           FS+  GKY+  + +  I++    G+ Y    P  G+G ++  +G+
Sbjct: 284 FSDKGGKYNSGKQVGFIRKDYQGGVQYSWFAPPKGEGLTKAGLGR 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,213,686
Number of Sequences: 59808
Number of extensions: 239597
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)