Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0620
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory...   103   9e-23
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   9.3  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   9.3  

>U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory
           abnormality protein14 protein.
          Length = 439

 Score =  103 bits (246), Expect = 9e-23
 Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGS 185
           M Y ++  T I++S I  G+AA   ++G  ++   +++++ ++  GINY++TG WY Q  
Sbjct: 83  MNYRQIPGTDIRMSKIGFGAAAIGGMFGNVEDS-IIKIVETAIKQGINYIDTGYWYSQSR 141

Query: 186 SEKDIGKALVGVPRDSXYIGSXVAATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDYVDL- 362
           SE  +GKAL  +PR + YI + V        + FDF A+K               Y+D+ 
Sbjct: 142 SESILGKALSKIPRKAYYISTKVGRFELDYARTFDFRADKILESLTNSLKRLQLTYIDIC 201

Query: 363 -IQVHDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
            +Q+HD  FAP+ S+ L ETL  LE        R IG
Sbjct: 202 YVQIHDADFAPNESIVLYETLQALEMAKSSGKIRHIG 238


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 125 FNELQASFLVIFPIDIAESGTSNTNVRNFDTGCTEL 18
           FN+L++    +F +D  E  TSN    + DT  TEL
Sbjct: 222 FNDLESYCCTLFFVDRIECTTSNDLFSSDDTSLTEL 257


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 164  SGFQIVDTEIQAFFNELQASFLVIFPIDIAESGTSNTNVRNFDTGCTEL 18
            S F+I  +++Q FFN L+        +   E    + NVR+     +EL
Sbjct: 2045 SSFKITSSDLQQFFNVLEKMDWSQISLPAQEHAIISKNVRSLAPSASEL 2093


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 164  SGFQIVDTEIQAFFNELQASFLVIFPIDIAESGTSNTNVRNFDTGCTEL 18
            S F+I  +++Q FFN L+        +   E    + NVR+     +EL
Sbjct: 2045 SSFKITSSDLQQFFNVLEKMDWSQISLPAQEHAIISKNVRSLAPSASEL 2093


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,671,812
Number of Sequences: 27780
Number of extensions: 172354
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)