Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0620
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH) ide...    93   1e-19
At1g60680.1 68414.m06831 aldo/keto reductase family protein cont...    43   1e-04
At1g60710.1 68414.m06834 aldo/keto reductase family protein cont...    42   2e-04
At1g04690.1 68414.m00466 potassium channel protein, putative nea...    42   2e-04
At1g60690.1 68414.m06832 aldo/keto reductase family protein cont...    42   3e-04
At1g60730.2 68414.m06837 aldo/keto reductase family protein cont...    40   7e-04
At1g60730.1 68414.m06836 aldo/keto reductase family protein cont...    40   7e-04
At1g04420.1 68414.m00433 aldo/keto reductase family protein Simi...    40   9e-04
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc...    27   5.0  
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein...    27   5.0  
At1g05030.1 68414.m00504 hexose transporter, putative similar to...    27   5.0  

>At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH)
           identical to L-galactose dehydrogenase [Arabidopsis
           thaliana] GI:16555790; similar to L-fucose dehydrogenase
           [Pseudomonas sp.] GI:829054; contains Pfam profile
           PF00248: oxidoreductase, aldo/keto reductase family
          Length = 319

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
 Frame = +3

Query: 21  LGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKDI 200
           LG TG+KVS +  G++   +++G   E  ++  ++E+  LGIN+ +T P+YG   SEK +
Sbjct: 9   LGNTGLKVSAVGFGASPLGSVFGPVAEDDAVATVREAFRLGINFFDTSPYYGGTLSEKML 68

Query: 201 GKAL--VGVPRDSXYIGSXVAATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDYVDLIQVH 374
           GK L  + VPR S YI   VA       + FDFSAE+              DYVD++  H
Sbjct: 69  GKGLKALQVPR-SDYI---VATKCGRYKEGFDFSAERVRKSIDESLERLQLDYVDILHCH 124

Query: 375 DITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
           DI F     + + ET+P L+   +    RFIG
Sbjct: 125 DIEFGSLDQI-VSETIPALQKLKQEGKTRFIG 155


>At1g60680.1 68414.m06831 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 346

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 182
           +R  +LG+ G++VS   +G  A S  YG    E  ++ L+  ++N G+ + +T   YG  
Sbjct: 7   VRRMKLGSQGLEVSAQGLGCMALSARYGAPKPETDAIALLHHAINSGVTFFDTSDMYGPE 66

Query: 183 SSEKDIGKAL 212
           ++E  +GKAL
Sbjct: 67  TNELLLGKAL 76


>At1g60710.1 68414.m06834 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 182
           +R  +LG+ G++VS   +G    S  YG    E  ++ LI  +++ G+  L+T   YG  
Sbjct: 7   VRRMKLGSQGLEVSAQGLGCMGLSAFYGAPKPENEAIALIHHAIHSGVTLLDTSDIYGPE 66

Query: 183 SSEKDIGKALVGVPRDSXYIGSXVAATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDYVDL 362
           ++E  +GKAL    R+   + +    +     +      E                 +DL
Sbjct: 67  TNEVLLGKALKDGVREKVELATKFGISYAEGKREVRGDPEYVRAACEASLKRLDIACIDL 126

Query: 363 IQVHDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
              H +    DT V ++ T+  L+  V     ++IG
Sbjct: 127 YYQHRV----DTRVPIEITMGELKKLVEEGKIKYIG 158


>At1g04690.1 68414.m00466 potassium channel protein, putative nearly
           identical to K+ channel protein [Arabidopsis thaliana]
           GI:1063415; contains Pfam profile PF00248:
           oxidoreductase, aldo/keto reductase family
          Length = 328

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGS 185
           M+Y  LG +G+KVS +S G  A+     + D K +  +++   + G+N+ +    Y  G 
Sbjct: 1   MQYKNLGKSGLKVSTLSFG--AWVTFGNQLDVKEAKSILQCCRDHGVNFFDNAEVYANGR 58

Query: 186 SEKDIGKAL--VGVPRDSXYIGSXVAATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDYVD 359
           +E+ +G+A+  +G  R    I + +             S +               DYVD
Sbjct: 59  AEEIMGQAIRELGWRRSDIVISTKIFWGGPGPNDK-GLSRKHIVEGTKASLKRLDMDYVD 117

Query: 360 LIQVHDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
           ++  H     PD S  ++ET+  +   +    A + G
Sbjct: 118 VLYCH----RPDASTPIEETVRAMNYVIDKGWAFYWG 150


>At1g60690.1 68414.m06832 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYG-KYDEKRSLELIKESLNLGINYLETGPWYGQG 182
           +R  +LG+ G++VS   +G    +  YG    E  ++ LI  +++ G+ +L+T   YG  
Sbjct: 7   VRRIKLGSQGLEVSAQGLGCMGLTGHYGASKPETEAIALIHHAIHSGVTFLDTSDMYGPE 66

Query: 183 SSEKDIGKAL 212
           ++E  +GKAL
Sbjct: 67  TNEILLGKAL 76


>At1g60730.2 68414.m06837 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 251

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 3/158 (1%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 182
           +R  +LG+ G++VS   +G    S  YG    E  ++ LI  +++ G+ +L+T   YG  
Sbjct: 7   VRRIKLGSQGLEVSAQGLGCMGLSAFYGTPKPETEAIALIHHAIHSGVTFLDTSDIYGPE 66

Query: 183 SSEKDIGKALVGVPRDSXYIGSXVAATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDY--V 356
           ++E  + KAL    R+   + +      R      +F  +               D   +
Sbjct: 67  TNELLLSKALKDGVREKVELATKYG--IRYAEGKVEFKGDPAYVRAACEASLMRVDVACI 124

Query: 357 DLIQVHDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
           DL   H I    DT V ++ T+  L+  V     ++IG
Sbjct: 125 DLYYQHRI----DTRVPIEITIGELKKLVEEGKIKYIG 158


>At1g60730.1 68414.m06836 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 3/158 (1%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYGK-YDEKRSLELIKESLNLGINYLETGPWYGQG 182
           +R  +LG+ G++VS   +G    S  YG    E  ++ LI  +++ G+ +L+T   YG  
Sbjct: 7   VRRIKLGSQGLEVSAQGLGCMGLSAFYGTPKPETEAIALIHHAIHSGVTFLDTSDIYGPE 66

Query: 183 SSEKDIGKALVGVPRDSXYIGSXVAATTRSTLKMFDFSAEKXXXXXXXXXXXXXXDY--V 356
           ++E  + KAL    R+   + +      R      +F  +               D   +
Sbjct: 67  TNELLLSKALKDGVREKVELATKYG--IRYAEGKVEFKGDPAYVRAACEASLMRVDVACI 124

Query: 357 DLIQVHDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
           DL   H I    DT V ++ T+  L+  V     ++IG
Sbjct: 125 DLYYQHRI----DTRVPIEITIGELKKLVEEGKIKYIG 158


>At1g04420.1 68414.m00433 aldo/keto reductase family protein Similar
           to SP|Q46933 Tas protein {Escherichia coli}, Babesia
           aldo-keto reductase SP|P40690; contains Pfam profile
           PF00248: oxidoreductase, aldo/keto reductase family
          Length = 412

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
 Frame = +3

Query: 6   MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYG--- 176
           M Y +LG + + +S +++G+  F     +  EK S E++  ++  GIN ++T   Y    
Sbjct: 56  MEYRKLGDSDLNISEVTMGTMTFGE---QNTEKESHEMLSYAIEEGINCIDTAEAYPIPM 112

Query: 177 ----QGSSEKDIGKALVGVPRDSXYIGSXV------AATTRSTLKMFDFSAEKXXXXXXX 326
               QG ++  I   L    RD   + + V      +A  R + ++    A         
Sbjct: 113 KKETQGKTDLYISSWLKSQQRDKIVLATKVCGYSERSAYIRDSGEILRVDAANIKESVEK 172

Query: 327 XXXXXXXDYVDLIQVH 374
                  DY+DL+Q+H
Sbjct: 173 SLKRLGTDYIDLLQIH 188


>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 595

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +3

Query: 57  VGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQ-GSSEKDIGKALVGVPRDS 233
           + ++ F N Y + DE+   E  ++  N   +  + G WY   GS   + G    GV +  
Sbjct: 492 IEASVFVNPYTELDEEEEKEKAEKEKNEDKDIEKIGSWYSNPGSGTTEAGAGGGGVGKYL 551

Query: 234 XYIGSXVAATTRSTL 278
             + S     T+ +L
Sbjct: 552 KAMSSTATKDTKGSL 566


>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 1080

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 134 ESRYQLSGNRTLVRSGQLRKGHW-EGFSW 217
           ++R+QLS  + +     +RK HW E F+W
Sbjct: 512 KTRHQLSQEKVVATISHMRKVHWFEKFNW 540


>At1g05030.1 68414.m00504 hexose transporter, putative similar to
           hexose transporters from Nicotiana tabacum (GI:8347244),
           Solanum tuberosum (GI:8347246), Arabidopsis thaliana
           (GI:8347250); contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 524

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 21  LGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLN 137
           +GT       +S+ +AAFS+++    + RSLE I+ SLN
Sbjct: 480 VGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLN 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,132
Number of Sequences: 28952
Number of extensions: 165501
Number of successful extensions: 393
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)