Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0617
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 126 2e-30
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 126 2e-30
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 96 5e-21
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 79 8e-16
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.039
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 4.5
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 4.5
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 26 5.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 7.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 126 bits (305), Expect = 2e-30
Identities = 55/83 (66%), Positives = 64/83 (77%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
IQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQA
Sbjct: 733 IQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQA 792
Query: 436 FPQCVFDHWQVLPGDPCEPQSKP 504
FPQ VFDHW + GDP +P SKP
Sbjct: 793 FPQLVFDHWSPMSGDPLDPTSKP 815
Score = 124 bits (299), Expect = 1e-29
Identities = 59/86 (68%), Positives = 64/86 (74%)
Frame = +2
Query: 8 SKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 187
+K V YLNEIKDSVVA F WA+KEG M EENLR RFNI DV LH DAIHRGGGQIIPT
Sbjct: 650 TKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTA 709
Query: 188 RRCLYACLLTAQPRLMEPVYLCEFSV 265
RR +YA L A P + EPV+L E V
Sbjct: 710 RRVVYASTLLASPIIQEPVFLVEIQV 735
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 456 PLAGPPWRPVRTSEQALHVVQETRKRKGLKEGLP 557
P++G P P Q +V E RKRKGLKE +P
Sbjct: 803 PMSGDPLDPTSKPGQ---IVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 126 bits (305), Expect = 2e-30
Identities = 55/83 (66%), Positives = 64/83 (77%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
IQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQA
Sbjct: 733 IQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQA 792
Query: 436 FPQCVFDHWQVLPGDPCEPQSKP 504
FPQ VFDHW + GDP +P SKP
Sbjct: 793 FPQLVFDHWSPMSGDPLDPTSKP 815
Score = 124 bits (299), Expect = 1e-29
Identities = 59/86 (68%), Positives = 64/86 (74%)
Frame = +2
Query: 8 SKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 187
+K V YLNEIKDSVVA F WA+KEG M EENLR RFNI DV LH DAIHRGGGQIIPT
Sbjct: 650 TKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTA 709
Query: 188 RRCLYACLLTAQPRLMEPVYLCEFSV 265
RR +YA L A P + EPV+L E V
Sbjct: 710 RRVVYASTLLASPIIQEPVFLVEIQV 735
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 456 PLAGPPWRPVRTSEQALHVVQETRKRKGLKEGLP 557
P++G P P Q +V E RKRKGLKE +P
Sbjct: 803 PMSGDPLDPTSKPGQ---IVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 95.9 bits (228), Expect = 5e-21
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +2
Query: 26 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 205
LN +K+ + GFQW +EG + +E +R V F + DV L + I+RGGGQIIPT RR Y+
Sbjct: 772 LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYS 831
Query: 206 CLLTAQPRLMEPVYLCE 256
LTA PRLMEPVY+ E
Sbjct: 832 SFLTASPRLMEPVYMVE 848
Score = 92.3 bits (219), Expect = 6e-20
Identities = 44/95 (46%), Positives = 61/95 (64%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQA
Sbjct: 849 VHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQA 908
Query: 436 FPQCVFDHWQVLPGDPCEPQSKPYTLYRKRERGKD 540
Q VFDHWQV+PGDP + KP L + RG D
Sbjct: 909 MCQMVFDHWQVVPGDPLDKSIKPKPL--EPARGSD 941
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 402 CRFAFQHRRTGLPAVRIRPLAGPPWRPVRTSEQALHVVQETRKRKGLKE 548
C+ F H + + + P P R S+ A + +TR+RKGL E
Sbjct: 910 CQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVE 958
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 78.6 bits (185), Expect = 8e-16
Identities = 35/82 (42%), Positives = 51/82 (62%)
Frame = +1
Query: 238 ACISL*IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRS 417
A S +Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++
Sbjct: 865 AMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILK 924
Query: 418 NTGGQAFPQCVFDHWQVLPGDP 483
T G A+PQ +F +++L +P
Sbjct: 925 RTSGAAYPQLIFHGFEMLDENP 946
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = +2
Query: 29 NEIKDSVVAGFQWAAKEGVMAEENLRGV-----RFNIYDVTLHTDAIHRGG----GQIIP 181
+++ + VV FQ +G + E ++G+ +F+I D + + + GQ+I
Sbjct: 786 SDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVIS 845
Query: 182 TTRRCLYACLLTAQPRLMEPVYLCE 256
+ + L PRLM +Y C+
Sbjct: 846 VVKESIRHGFLGWSPRLMLAMYSCD 870
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.039
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 432
I P GG+ G L++R+ + + F ++A +P+N F +++D+R+ T G+
Sbjct: 683 ITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRALTKGK 739
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 186 VVGMIWPPPLWMASVWSVTS*MLNLTPRKFSSAITPSLAA 67
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 162 PLWMASVWSVTS*MLNLTPRKFSSAITPSLAAHWNPATTESLISLRY 22
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 184 CWNDLATTSMDGISMECYIIDVESNTTQI 98
CW++L+TTS + + II + TT I
Sbjct: 211 CWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 295 HRRYHPQLLQDTEFTKIYRLHKTGLSS*QTCVQASSSCWNDLATTSMDGISME 137
H Y LL++ E I LHK+ + +Q S + + T + +SME
Sbjct: 126 HAVYMSNLLRNVEQKWIQFLHKSWMKWLHISIQESQLTFPSVGTFELGSLSME 178
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 23 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 115
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 619 IYTESASRMFIFNNTCFRIILKQT 690
IYT+ A + IF N CF++ L T
Sbjct: 424 IYTQYAFQWQIFKNKCFQLDLMNT 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,868
Number of Sequences: 5004
Number of extensions: 66509
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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