Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0617
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 153 1e-37
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 2e-20
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 96 3e-20
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 73 3e-13
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 33 0.17
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09) 28 6.3
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 28 8.3
SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5) 28 8.3
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 153 bits (371), Expect = 1e-37
Identities = 72/86 (83%), Positives = 74/86 (86%)
Frame = +1
Query: 247 SL*IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTG 426
S+ IQCPE AVGGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TG
Sbjct: 721 SVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTG 780
Query: 427 GQAFPQCVFDHWQVLPGDPCEPQSKP 504
GQAFPQCVFDHWQVLPGD + S P
Sbjct: 781 GQAFPQCVFDHWQVLPGDVHDLASMP 806
Score = 148 bits (358), Expect = 5e-36
Identities = 67/83 (80%), Positives = 74/83 (89%)
Frame = +2
Query: 8 SKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 187
SKGVQYLNEIKDSVVAGFQWA KEG + +EN+RGVRFNI+DVTLH DAIHRGGGQIIPT
Sbjct: 641 SKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHADAIHRGGGQIIPTA 700
Query: 188 RRCLYACLLTAQPRLMEPVYLCE 256
RR LYAC+LTA+P L+EPVY E
Sbjct: 701 RRVLYACMLTAKPCLLEPVYSVE 723
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 510 VVQETRKRKGLKEGLP 557
VV TRKRKGLKEG+P
Sbjct: 809 VVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 96.7 bits (230), Expect = 2e-20
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +2
Query: 26 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 205
LN +KDS++ GFQWA +EG + +E +R V+F I D + + IHRGGGQIIPT RR Y+
Sbjct: 627 LNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYS 686
Query: 206 CLLTAQPRLMEPVYLCE 256
L A PRLMEP + E
Sbjct: 687 AFLMATPRLMEPYFFVE 703
Score = 95.9 bits (228), Expect = 3e-20
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR++T GQA
Sbjct: 704 VQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA 763
Query: 436 FPQCVFDHWQVLPGDPCE 489
F VF HWQ++PGDP +
Sbjct: 764 FCLSVFHHWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 95.9 bits (228), Expect = 3e-20
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR++T GQA
Sbjct: 14 VQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA 73
Query: 436 FPQCVFDHWQVLPGDPCE 489
F VF HWQ++PGDP +
Sbjct: 74 FCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
IQ +G +Y V+ RR G V E G+ +F V+A LPV ESFGF+ ++R T G A
Sbjct: 420 IQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLA 479
Query: 436 FPQCVFDHWQVLPGDP 483
PQ +F HW+ + DP
Sbjct: 480 NPQLMFSHWEAIDLDP 495
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 280 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 432
G + +NRR G V G F + A +P+N+ FG+ +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 377 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASP 505
+S + L P+ VPTPA R S + RS +TRAN+R SP
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSP 193
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 116 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 250
FN V L + R +I+PT RR + LLT+ +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
Length = 283
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 461 QWSNTHCGKACPPVLE--RKSAVKPNDSL 381
Q+ +CG ACPP E KS VK N L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 323 SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 475
+K P + L SL P + S S L P+P +PS S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = +1
Query: 466 VLPGDPCEPQS-KPYT 510
+LP PCEP S KPYT
Sbjct: 65 ILPASPCEPDSPKPYT 80
>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
Length = 592
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 422 PADRPSRSAYST--IGRSSLETRANLRASPTRCTGNEKEERIEGRSPRLNSIFGQIV 586
PA +PS S+ S G S+ R N SP+R TG+ + S + S ++V
Sbjct: 309 PASKPSGSSSSARPSGTSTPTNRQNAADSPSRGTGSSSTKSSGNSSSKTQSTSNRVV 365
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 219 AVSRHAYKHLLVVGMIWPPPLWMA 148
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,441,186
Number of Sequences: 59808
Number of extensions: 532086
Number of successful extensions: 1335
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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