Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0617
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 172 2e-43
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 172 2e-43
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 95 6e-20
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 95 6e-20
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 59 3e-09
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF067936-6|AAC19214.1| 348|Caenorhabditis elegans Ground-like (... 29 4.2
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 4.2
AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical ... 28 5.5
AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical ... 28 5.5
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 27 9.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 172 bits (418), Expect = 2e-43
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
IQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQA
Sbjct: 743 IQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 802
Query: 436 FPQCVFDHWQVLPGDPCEPQSKP 504
FPQCVFDHWQVLPGDP E +KP
Sbjct: 803 FPQCVFDHWQVLPGDPLEAGTKP 825
Score = 148 bits (359), Expect = 3e-36
Identities = 65/83 (78%), Positives = 76/83 (91%)
Frame = +2
Query: 8 SKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 187
+KGVQYLNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT
Sbjct: 660 TKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTA 719
Query: 188 RRCLYACLLTAQPRLMEPVYLCE 256
RR YA +LTA+PRL+EPVYL E
Sbjct: 720 RRVFYASVLTAEPRLLEPVYLVE 742
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 471 PWRPVRTSEQALHVVQETRKRKGLKEGLP 557
P P+ + +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 172 bits (418), Expect = 2e-43
Identities = 76/83 (91%), Positives = 78/83 (93%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
IQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQA
Sbjct: 743 IQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 802
Query: 436 FPQCVFDHWQVLPGDPCEPQSKP 504
FPQCVFDHWQVLPGDP E +KP
Sbjct: 803 FPQCVFDHWQVLPGDPLEAGTKP 825
Score = 148 bits (359), Expect = 3e-36
Identities = 65/83 (78%), Positives = 76/83 (91%)
Frame = +2
Query: 8 SKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 187
+KGVQYLNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT
Sbjct: 660 TKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTA 719
Query: 188 RRCLYACLLTAQPRLMEPVYLCE 256
RR YA +LTA+PRL+EPVYL E
Sbjct: 720 RRVFYASVLTAEPRLLEPVYLVE 742
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 471 PWRPVRTSEQALHVVQETRKRKGLKEGLP 557
P P+ + +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 94.7 bits (225), Expect = 6e-20
Identities = 39/77 (50%), Positives = 55/77 (71%)
Frame = +2
Query: 26 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 205
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 763 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 822
Query: 206 CLLTAQPRLMEPVYLCE 256
L A PRLMEP Y E
Sbjct: 823 AFLMATPRLMEPYYTVE 839
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/78 (47%), Positives = 52/78 (66%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQA
Sbjct: 840 VVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQA 899
Query: 436 FPQCVFDHWQVLPGDPCE 489
F F HWQ++PGDP +
Sbjct: 900 FCMSAFHHWQLVPGDPLD 917
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 94.7 bits (225), Expect = 6e-20
Identities = 39/77 (50%), Positives = 55/77 (71%)
Frame = +2
Query: 26 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 205
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 638 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 697
Query: 206 CLLTAQPRLMEPVYLCE 256
L A PRLMEP Y E
Sbjct: 698 AFLMATPRLMEPYYTVE 714
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/78 (47%), Positives = 52/78 (66%)
Frame = +1
Query: 256 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 435
+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQA
Sbjct: 715 VVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQA 774
Query: 436 FPQCVFDHWQVLPGDPCE 489
F F HWQ++PGDP +
Sbjct: 775 FCMSAFHHWQLVPGDPLD 792
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 59.3 bits (137), Expect = 3e-09
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Frame = +1
Query: 190 KMLVRMSANCSAPSYGACISL*-------IQCPEVAVGGIYGVLNRRRGHVFEESQVAGT 348
+M+ + A+CSA + + L + A+G ++ VL++R+ V E T
Sbjct: 734 QMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEAT 793
Query: 349 PMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 483
+F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 794 NLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = +1
Query: 319 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 483
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical
protein C46F11.2b protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 33 KLRTLLWLDSSGPLRKELWLKRICVVLDST 122
K++TL+W PL KEL L+R+ V D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285
>Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical
protein C46F11.2a protein.
Length = 473
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 33 KLRTLLWLDSSGPLRKELWLKRICVVLDST 122
K++TL+W PL KEL L+R+ V D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299
>AF067936-6|AAC19214.1| 348|Caenorhabditis elegans Ground-like (grd
related) protein 1 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 216 LLSPVLWSLYIFVNSVS*SSCGWYL 290
+L+P+L LY VNS + ++CG Y+
Sbjct: 1 MLAPILLLLYFSVNSAAANNCGGYM 25
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 474 REDLPMVEYALREGLSAGVGTQIGSKTERLID 379
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical
protein C10F3.4a protein.
Length = 458
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 494 RASPTRCTGNEKEERIEGRSPRL 562
RA P R TG EKEE G P+L
Sbjct: 307 RAQPIRTTGAEKEEDRRGERPQL 329
>AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical
protein C10F3.4b protein.
Length = 482
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 494 RASPTRCTGNEKEERIEGRSPRL 562
RA P R TG EKEE G P+L
Sbjct: 331 RAQPIRTTGAEKEEDRRGERPQL 353
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 280 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 432
G + L +R + G I +A P+++ FG+T++LRS T G+
Sbjct: 659 GNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLTEGK 707
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 92 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 223
+ NL +++ TLH +HR IP R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,829
Number of Sequences: 27780
Number of extensions: 392455
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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