Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0615
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EFP0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_A0DF74 Cluster: Chromosome undetermined scaffold_49, wh...    33   8.6  

>UniRef50_A2EFP0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1053

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -1

Query: 595 ETQTRKSITSNFTSNLTKKKESFIILINRTPTLVIQ*SKL*FLI 464
           E QT KS T NFT+ L + ++SF+  I R P+ +   S + +L+
Sbjct: 483 EDQTEKSDTRNFTAPLLQWRQSFLNFIRRCPSTMRPLSAIPYLL 526


>UniRef50_A0DF74 Cluster: Chromosome undetermined scaffold_49, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_49,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 127

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 416 IXLMSTV-LLCIQLGFNEWTRPRNTQMSRVRYXFLNFIXQFTNXRIYIRKVL 264
           + + +TV  +CIQL F+ W++ R  +MSR      N + Q  N   +IR+ +
Sbjct: 10  LLIFTTVQTICIQLLFDPWSQERFERMSRENARLFNPLLQILNRIDFIREAI 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,480,528
Number of Sequences: 1657284
Number of extensions: 7917449
Number of successful extensions: 14310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14306
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)