Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0615
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z78067-1|CAB01533.1| 1170|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical
           protein F21H7.9 protein.
          Length = 1108

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 52  NVCVILYSSLLKCYINLLSNKCLIKKRIVIKI 147
           N    ++SS LKC+  L S  CLI  R  IKI
Sbjct: 648 NGLYFIHSSFLKCHGQLTSRCCLIDDRWQIKI 679


>Z78067-1|CAB01533.1| 1170|Caenorhabditis elegans Hypothetical
           protein ZC412.2 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 52  NVCVILYSSLLKCYINLLSNKCLIKKRIVIKI 147
           N  + +++S LKC+ +L S  CLI  R  IKI
Sbjct: 706 NGLLFIHNSFLKCHGHLTSRCCLIDDRWQIKI 737


>AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical
           protein Y50D4B.4 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 503 YSRYSIIKVIIFNKRYPSTKFCVXQLXSFIXLMSTVLLCIQLGFNEWTRPRNTQMSRVRY 324
           YS  S+ +  I  +++PS K     L   + + STV L I  GF+      N  ++ V Y
Sbjct: 8   YSPLSLGETNISQQKHPSKKSTALALVGTLVIFSTVSLAIFGGFSNDDSDDNFGIAHVPY 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,548
Number of Sequences: 27780
Number of extensions: 206567
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)