Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0615
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23510.1 68417.m03388 disease resistance protein (TIR class),...    28   5.0  
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla...    28   6.6  
At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS cla...    28   6.6  
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR...    27   8.8  

>At4g23510.1 68417.m03388 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 497 RYSIIKVIIFNKRYPSTKFCVXQLXSFIXLMST 399
           R S I ++IF+ +YP +++C+ +L      M T
Sbjct: 61  RESSIALVIFSDKYPESRWCLDELVEIKKQMET 93


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1298

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 491 SIIKVIIFNKRYPSTKFCVXQLXSFIXLMSTVLLCIQLG 375
           S I V++F+K Y S+ +C+ +L   +     +++ +  G
Sbjct: 103 SRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYG 141


>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 858

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 491 SIIKVIIFNKRYPSTKFCVXQLXSFIXLMSTVLLCIQLG 375
           S I V++F+K Y S+ +C+ +L   +     +++ +  G
Sbjct: 65  SRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYG 103


>At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 491 SIIKVIIFNKRYPSTKFCVXQLXSFIXLMSTVLLCIQLG 375
           S I V++F+K Y S+ +C+ +L   +     +++ +  G
Sbjct: 65  SRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYG 103


>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 491 SIIKVIIFNKRYPSTKFCVXQLXSFIXLMSTVLLCIQLG 375
           S I V+IF+K Y S+ +C+ +L   +     +++ +  G
Sbjct: 65  SRIAVVIFSKNYASSSWCLNELLEIVNCNDKIVIPVFYG 103


>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 491 SIIKVIIFNKRYPSTKFCVXQLXSFIXLMSTVLLCIQLG 375
           S I V++F+K Y S+ +C+ +L   +     +++ +  G
Sbjct: 65  SRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYG 103


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 491 SIIKVIIFNKRYPSTKFCVXQLXSFIXLMSTVL 393
           S I V++F+K+Y S+ +C+ +L   +     V+
Sbjct: 64  SRIAVVVFSKKYSSSSWCLNELVEIVNCKEIVI 96


>At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1229

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = -3

Query: 491 SIIKVIIFNKRYPSTKFCVXQL 426
           S+I +++F+K+Y S+ +C+ +L
Sbjct: 64  SMISIVVFSKKYASSTWCLNEL 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,595
Number of Sequences: 28952
Number of extensions: 176444
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)