Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0614
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    30   0.26 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   4.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   9.7  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   9.7  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    25   9.7  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 359 IRKWGFRFWTYWKNYVSKGVXETFYW---LLVNFDRIL 463
           +RKW  +   + K Y+   + ETF+W   ++ N DR++
Sbjct: 430 VRKWTQKVDLFHKKYIIVPINETFHWYLAIICNIDRLM 467


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 292 SDELFNVILNSVLNFAFLCIFVHRYLL 212
           +DE FN + N++ + +  CI  H+Y +
Sbjct: 739 NDEQFNYVFNTLTSISDQCISSHKYCM 765


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 452 RNSLVTNKTSLEPLSKHNFSNRSKS 378
           +N   ++  +  PL  HNFSN SKS
Sbjct: 185 KNLNTSSFNTRSPLRNHNFSNPSKS 209


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 530 VPFVTKVNVEKLFYGSVKSGRKA 598
           +P++T  N   +FYG VK  ++A
Sbjct: 838 LPYITMKNYRNVFYGGVKDIQEA 860


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 552 MWKNYFMVQLNPG 590
           +WKN F+ +LNPG
Sbjct: 90  LWKNIFVSRLNPG 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,515
Number of Sequences: 5004
Number of extensions: 53512
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)