Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0614
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904     29   3.3  
06_02_0016 - 10623796-10625317,10626493-10627541                       28   7.6  

>06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904
          Length = 345

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 531 FHLSPKLMWKNYFMVQLNPGVKLSQGNSF 617
           FH S  LMW++    +L+ GV L++GN +
Sbjct: 121 FHSSYALMWRSKVPEELSSGVHLNKGNIY 149


>06_02_0016 - 10623796-10625317,10626493-10627541
          Length = 856

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 144 FKINNTLFNCSLIVI*ILITQFXKRY 221
           F  N+T F  S+IVI +L+ Q+ K+Y
Sbjct: 752 FYCNSTSFMASIIVIILLLQQYQKKY 777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,798
Number of Sequences: 37544
Number of extensions: 276097
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)