Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0614
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)                    28   7.7  

>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 222 RCTKMHKNAKLRTEFKITLNNS--SESFQFSNTFLKLATLXNYF 347
           RC K +KN K+R  F +  NN+  +     SN F+ L+T   ++
Sbjct: 116 RC-KQNKNPKIRLPFPVIANNAKPTRMESLSNNFIALSTSERFY 158


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 353 IKIRKWGFRFWTYWKNYVSKGVXETFYWLLVNFD-RILSLKV 475
           I   K+G +  TY+KN  +  + + F W  ++F  R+  L+V
Sbjct: 293 ISFEKYGTQITTYYKNPSNLMIEQVFGWKCISFSHRLAKLEV 334


>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 585 DLTEP*NNFSTLTLVTNGTKVPEIRDLVI 499
           ++TEP NNF   + + + T +PE  D +I
Sbjct: 292 NITEPTNNFDIFSTIADMTGIPEPADRII 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,280
Number of Sequences: 59808
Number of extensions: 338313
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)