Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0614
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.4  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   6.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   6.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   6.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 291 ESFQFSNTFLKLATLXNYF*ILKYESGDFAF 383
           +SF ++NT++ +A +  Y  I+ Y + D +F
Sbjct: 191 QSFDYNNTWVYIADVEGYALII-YNNADDSF 220


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 561 NYFMVQLNPGVKLSQGNSFTRVRP 632
           NYF   ++ G   ++GN   RV P
Sbjct: 46  NYFKCLMDEGRCTAEGNELKRVLP 69


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 561 NYFMVQLNPGVKLSQGNSFTRVRP 632
           NYF   ++ G   ++GN   RV P
Sbjct: 46  NYFKCLMDEGRCTAEGNELKRVLP 69


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 561 NYFMVQLNPGVKLSQGNSFTRVRP 632
           NYF   ++ G   ++GN   RV P
Sbjct: 46  NYFKCLMDEGRCTAEGNELKRVLP 69


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 383 WTYWKNYVSKGVXETFYWLLVNFDRILSLKV 475
           + +WKN+  K + E  Y   V   + LS+++
Sbjct: 9   YDFWKNWDLKNLTEAEYLAKVLGPKYLSMRM 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,015
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)