Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0614
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53940.1 68416.m05959 mitochondrial substrate carrier family ...    27   8.4  
At2g26190.1 68415.m03145 calmodulin-binding family protein conta...    27   8.4  
At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR cla...    27   8.4  

>At3g53940.1 68416.m05959 mitochondrial substrate carrier family
           protein
          Length = 365

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 506 WLSNKLKDM*XLLTIGCGRNSLVTNKTSLEPL 411
           WLS++  D   ++++GCG  S + + T+  PL
Sbjct: 261 WLSHRPNDSNAVVSLGCGSLSGIVSSTATFPL 292


>At2g26190.1 68415.m03145 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 532

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 650 GPIPSQRPNPRKRI 609
           GPIPS RP+PR R+
Sbjct: 501 GPIPSPRPSPRVRV 514


>At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 422 ETFYWLLVNFDRILSLKVPTCP*VY*ITKSRISGTLVPFVTKVNV 556
           E+ YW  ++F R+L + V  CP    + K  ++ T VP V +  +
Sbjct: 693 ESIYWSPLHFPRLLIIHVLDCP---KLRKLPLNATSVPLVEEFQI 734


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,072
Number of Sequences: 28952
Number of extensions: 255108
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)