Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0613
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    40   3e-04
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    38   0.002
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    36   0.007
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    33   0.039
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    30   0.28 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   1.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.6  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   4.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.9  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +3

Query: 42  ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
           E   IAS   + +MPTFVF +NGK++D  +GAN
Sbjct: 62  EQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 42  ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
           +  +IA+E  +++MP+F   KNG+K++E  GAN
Sbjct: 59  QLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 6   RDSIXXXXXXXXECEDIASEYNINSMPTFVFVKNGKKLDEFSG 134
           +D I        E  D+ SEY+I   PT    KNGK++ ++SG
Sbjct: 70  KDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 51  DIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
           DIA  +++N++P FV +   K L   SGAN
Sbjct: 64  DIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 51  DIASEYNINSMPTFVFVKNGKKLDEFSGANV 143
           DIA +  + ++PT V  + G++LD   GA+V
Sbjct: 79  DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +2

Query: 488 LFLSGRTKCIISPILINV*DKFPSCF*KLLVSNKYHNGF 604
           LFL G T+ +  P+L ++ ++F S    L++++ Y +GF
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQ-SLILNHNYRHGF 445


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 311 KINIFKFITDVKNIFYSFIKTYT 243
           KI +F F+ D  + FY FI +YT
Sbjct: 234 KIYLFGFLYDGSSSFYDFINSYT 256


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 579 TKSF*KH---DGNLSYTLISIGEIIHLVRPDKNKNKNITIHTLKFLSNHLVKKTKI 421
           +KSF KH   D  L  ++ S+ ++   ++P KN N +   HTL    + L++ +K+
Sbjct: 222 SKSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 626  YWHNIKTKNHCDTCYLPKVFKSTMETY 546
            Y  N+K    C+  +LP  F++++ TY
Sbjct: 1026 YHRNLKVLCICNGAWLPATFRTSLSTY 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,986
Number of Sequences: 5004
Number of extensions: 50205
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)