Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0613
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 42 5e-04
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 39 0.004
12_01_1027 + 10529545-10529777,10530269-10530668 38 0.006
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 38 0.006
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 37 0.018
04_04_0598 - 26514226-26514545,26516080-26516302 37 0.018
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 36 0.023
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580... 36 0.023
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 36 0.041
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005... 34 0.094
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 34 0.12
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774 31 0.66
03_06_0330 - 33178114-33178206,33178317-33178382,33179704-331798... 31 0.87
07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215 31 1.2
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 30 2.0
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 28 6.2
04_04_0782 + 28038292-28038413,28038577-28038778,28039221-280392... 28 8.1
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
E +++A +YN+ +MPTF+F+K+G + D+ GA D
Sbjct: 69 ELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 103
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/33 (42%), Positives = 25/33 (75%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E +A +N++S+P+F FV+NGK++D+ GA+
Sbjct: 700 ELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGAD 732
>12_01_1027 + 10529545-10529777,10530269-10530668
Length = 210
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 42 ECEDIASEYNINSM-PTFVFVKNGKKLDEFSGA 137
E E+IA Y++N + PTF FVK G+K+D GA
Sbjct: 45 ELEEIADSYDVNGVVPTFTFVKAGQKIDMIQGA 77
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E D +S ++I + PTF F+KNG+++D+ GAN
Sbjct: 584 ELMDFSSSWDIRATPTFFFLKNGEQVDKLVGAN 616
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 51 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
D +S ++I + PTF F+KN K++D+ GAN
Sbjct: 88 DFSSSWDIRATPTFFFIKNEKQVDKLVGAN 117
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 137
E DIAS+Y + S+PT + KNG+K D GA
Sbjct: 133 ENPDIASQYGVRSIPTMMIFKNGEKKDAVIGA 164
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 42 ECEDIASEYNINSM-PTFVFVKNGKKLDEFSGAN 140
E E + Y+I + PTF FVK+G+K+D+ GAN
Sbjct: 1039 ELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGAN 1072
>05_05_0229 -
23457438-23457629,23457706-23457828,23457913-23458026,
23462062-23462597,23463258-23464545
Length = 750
Score = 36.3 bits (80), Expect = 0.023
Identities = 10/31 (32%), Positives = 24/31 (77%)
Frame = +3
Query: 48 EDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
+++ ++Y++ + PTF+F+KN +++D+ G N
Sbjct: 700 QELVTQYDVRATPTFIFMKNNEEIDKLVGGN 730
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E +I+ Y + ++P FVF+K GK +D GAN
Sbjct: 61 EQPEISEAYGVTAVPYFVFLKEGKTVDTLEGAN 93
>02_05_0085 -
25697860-25698142,25698631-25698946,25700481-25700518,
25700955-25701036,25701815-25702016
Length = 306
Score = 34.3 bits (75), Expect = 0.094
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 137
E DIA+++ I S+PT + KNG+K D GA
Sbjct: 166 ENPDIATQFGIRSIPTMMIFKNGEKKDAVIGA 197
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
E + IA ++++ +MPTF+F+K G D GA D
Sbjct: 75 ELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKD 109
>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
Length = 187
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 48 EDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
+ +A E I +PTF +K+GK + E +GA +D
Sbjct: 143 KSLAKELGIKVVPTFKILKDGKVVKEVTGAKLD 175
>03_06_0330 -
33178114-33178206,33178317-33178382,33179704-33179826,
33179930-33180067
Length = 139
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKK 116
E ++A ++ + +MPTFV +K GK+
Sbjct: 85 ELSEVARQWKVEAMPTFVLIKGGKE 109
>07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215
Length = 138
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
E ++A + + +MPTFV + G+++ GA+ D
Sbjct: 84 ELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKD 118
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
+ + ++S+ + +MPTF +K+ + +++ GAN D
Sbjct: 75 DVQSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPD 109
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 268 KMFLTSVMNLKILIFCVCSLWN 333
K + SV+ L +L +C+C WN
Sbjct: 87 KSIMKSVIQLFLLFYCICMAWN 108
>04_04_0782 +
28038292-28038413,28038577-28038778,28039221-28039246,
28039750-28039969
Length = 189
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSG 134
EC + NI PTF F ++G+K+DE G
Sbjct: 147 ECPETTQ--NIRYTPTFHFYRDGEKVDEMLG 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,860
Number of Sequences: 37544
Number of extensions: 256158
Number of successful extensions: 478
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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