Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0613
         (695 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    51   4e-08
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.2  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 50.8 bits (116), Expect = 4e-08
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +3

Query: 9   DSIXXXXXXXXECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
           D I        ECE++A++YNI SMPTF+F+K  + + +FSGAN +
Sbjct: 51  DKIVVVKVDVDECEELAAQYNIASMPTFLFIKRKEVVGQFSGANAE 96


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 190 LVSIYLCLRIVVLSLSTLAPE 128
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 190 LVSIYLCLRIVVLSLSTLAPE 128
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,814
Number of Sequences: 2352
Number of extensions: 11220
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)