Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0613
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 44 1e-04
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 41 7e-04
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 41 0.001
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 40 0.001
At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identica... 40 0.002
At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i... 37 0.011
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 37 0.015
At1g76760.1 68414.m08933 thioredoxin family protein similar to t... 36 0.026
At3g56420.1 68416.m06275 thioredoxin family protein similar to t... 35 0.045
At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38... 35 0.045
At1g43560.1 68414.m05000 thioredoxin family protein contains Pfa... 35 0.045
At2g40790.1 68415.m05032 thioredoxin family protein contains Pfa... 33 0.14
At4g04950.1 68417.m00719 thioredoxin family protein similar to P... 33 0.24
At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1) i... 32 0.32
At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38... 32 0.32
At4g32580.1 68417.m04638 thioredoxin family protein contains Pfa... 31 0.55
At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-... 31 0.96
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu... 28 5.1
At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, pu... 28 5.1
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu... 28 5.1
At4g34060.1 68417.m04833 expressed protein similar to DEMETER pr... 28 6.8
At2g15570.1 68415.m01783 thioredoxin M-type 3, chloroplast (TRX-... 28 6.8
At3g53220.1 68416.m05864 thioredoxin family protein low similari... 27 9.0
At1g78740.1 68414.m09177 hypothetical protein 27 9.0
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
E D+A E+N+ +MPTFV VK GK+++ GA D
Sbjct: 88 ELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKD 122
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
E +++AS+ + +MPTF+F+K+G +D+ GAN D
Sbjct: 65 EVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPD 99
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E + +A E+ + +MPTFVF+K G+ +D+ GAN
Sbjct: 70 ELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGAN 102
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/33 (42%), Positives = 27/33 (81%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
+ D+A+ +NI+S+PTF F+++GK++D+ GA+
Sbjct: 333 KANDVAASWNISSVPTFCFIRDGKEVDKVVGAD 365
>At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identical
to SP|P29448 Thioredoxin H-type 1 (TRX-H-1) {Arabidopsis
thaliana}
Length = 114
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
E + +AS++ I +MPTF+F+K GK LD+ GA D
Sbjct: 69 ELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKD 103
>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
{Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
for thioredoxin GI:992965
Length = 118
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
E + +A E+ + +MPTFVF+K G +D GA D
Sbjct: 68 ELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKD 102
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E D +S ++I + PTF F+KNG+++ + GAN
Sbjct: 86 ELSDFSSSWDIKATPTFFFLKNGQQIGKLVGAN 118
>At1g76760.1 68414.m08933 thioredoxin family protein similar to
thioredoxin CH2, M-type, chloroplast precursor GB:P23400
SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam
profile: PF00085 Thioredoxin
Length = 172
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 6 RDSIXXXXXXXXECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 137
+D I + IA++Y I ++PTF+ K+G+ D F GA
Sbjct: 111 KDKIQVVKIDTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGA 154
>At3g56420.1 68416.m06275 thioredoxin family protein similar to
thioredoxin [Nicotiana tabacum] GI:20047; contains Pfam
profile: PF00085 Thioredoxin
Length = 100
Score = 35.1 bits (77), Expect = 0.045
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 137
E + ++E+N+ + PT VF+K+G+++D+ GA
Sbjct: 49 ELAEFSNEWNVEATPTVVFLKDGRQMDKLVGA 80
>At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 129
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 51 DIASEYNINSMPTFVFVKNGKKLDEFSGANVD 146
D+A Y ++P FVFVK G+++D GA D
Sbjct: 87 DVAGTYRAITLPAFVFVKRGEEIDRVVGAKPD 118
>At1g43560.1 68414.m05000 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; similar to thioredoxin
GI:142153 from [Synechococcus PCC6301]
Length = 167
Score = 35.1 bits (77), Expect = 0.045
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 54 IASEYNINSMPTFVFVKNGKKLDEFSGA 137
+A++Y I ++PTF+ K+GK D F GA
Sbjct: 122 LANKYQIEALPTFILFKDGKLWDRFEGA 149
>At2g40790.1 68415.m05032 thioredoxin family protein contains Pfam
profile: PF00085 thioredoxin
Length = 154
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E + + E+N+++ PT VF+K+G+++D+ G +
Sbjct: 103 ELAEFSHEWNVDATPTVVFLKDGRQMDKLVGGD 135
>At4g04950.1 68417.m00719 thioredoxin family protein similar to
PKCq-interacting protein PICOT from [Mus musculus]
GI:6840949, [Rattus norvegicus] GI:6840951; contains
Pfam profile PF00085: Thioredoxin
Length = 488
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E +I+ Y++ ++P FVF K+GK +D GA+
Sbjct: 62 EHPEISEAYSVAAVPYFVFFKDGKTVDTLEGAD 94
>At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1)
identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3)
{Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA
for thioredoxin GI:992961
Length = 118
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 137
E +A E+ + +MPTF+F+K G+ + GA
Sbjct: 68 ELNTVAEEFKVQAMPTFIFMKEGEIKETVVGA 99
>At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 148
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 63 EYNINSMPTFVFVKNGKKLDEFSGANVD 146
E+N++++P VF+K G+++D G VD
Sbjct: 107 EFNLSTLPAIVFMKRGREVDMVVGVKVD 134
>At4g32580.1 68417.m04638 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 160
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 140
E +I+ Y++ +P FVF K+GK +D GA+
Sbjct: 62 EHPEISEAYSVALVPYFVFFKDGKTVDTLEGAD 94
>At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4)
nearly identical to SP|Q9SEU6 Thioredoxin M-type 4,
chloroplast precursor (TRX-M4) {Arabidopsis thaliana}
Length = 193
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 42 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 137
E + A+ Y I S+PT + K G+K D GA
Sbjct: 146 ESPNTANRYGIRSVPTVIIFKGGEKKDSIIGA 177
>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 277
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 355 QQNQYFLHSRGCKHKKLISSNSLQTLKTFFI 263
Q NQ FL+ + KL+ NS T+ TF++
Sbjct: 60 QSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 90
>At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 355 QQNQYFLHSRGCKHKKLISSNSLQTLKTFFI 263
Q NQ FL+ + KL+ NS T+ TF++
Sbjct: 65 QSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 95
>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 355 QQNQYFLHSRGCKHKKLISSNSLQTLKTFFI 263
Q NQ FL+ + KL+ NS T+ TF++
Sbjct: 65 QSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 95
>At4g34060.1 68417.m04833 expressed protein similar to DEMETER
protein [Arabidopsis thaliana] GI:21743571; expression
supported by MPSS
Length = 1073
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 519 IIHLVRPDKNKNKNITIHTLKFLSNHLVKKTKIEIQ 412
I+ + + N+N NI + L+ +HLVK+ +EI+
Sbjct: 582 ILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIE 617
>At2g15570.1 68415.m01783 thioredoxin M-type 3, chloroplast (TRX-M3)
identical to SP|Q9SEU7 Thioredoxin M-type 3, chloroplast
precursor (TRX-M3) {Arabidopsis thaliana}
Length = 173
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 54 IASEYNINSMPTFVFVKNGKKLDEFSG 134
+A EY I ++P + KNG+K + G
Sbjct: 130 VAEEYEIKAVPVVLLFKNGEKRESIMG 156
>At3g53220.1 68416.m05864 thioredoxin family protein low similarity
to SP|P29451 Thioredoxin [Rhesus macaque] {Macaca
mulatta}; contains Pfam profile: PF00085 Thioredoxin
Length = 126
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 69 NINSMPTFVFVKNGKKLDEFSGA 137
+I PTF F ++G+K+DE GA
Sbjct: 91 HIRYTPTFQFYRDGEKVDEMFGA 113
>At1g78740.1 68414.m09177 hypothetical protein
Length = 306
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 184 SIYLCLRIVVLSLSTLA-PENSSSFLPFLTKTNVG 83
+IY+C +V L LST+ P S LPFL +G
Sbjct: 94 TIYICESLVSLKLSTVTLPSVKSVSLPFLRVLKLG 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,071,121
Number of Sequences: 28952
Number of extensions: 236360
Number of successful extensions: 498
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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