Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0612
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   2.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   6.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 494 SCCVCPCDLSYV 459
           SC VC CD  Y+
Sbjct: 773 SCTVCTCDAKYL 784


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 177 INKICPLSRIIEQCVILLHKTFTDCIVL 94
           +NKIC L   + + V L ++TF   ++L
Sbjct: 502 LNKICALHHHLSKLVKLFNETFGIVLLL 529


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 177 INKICPLSRIIEQCVILLHKTFTDCIVL 94
           +NKIC L   + + V L ++TF   ++L
Sbjct: 227 LNKICALHHHLSKLVKLFNETFGIVLLL 254


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 38  GFLLV*QIDTS*SKWRSIRSTMQSVKVLCNN 130
           GF++   +DT  SK+R +   + + KV+ ++
Sbjct: 143 GFMIYLILDTIKSKYRQMHRLLANYKVITSD 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,518
Number of Sequences: 336
Number of extensions: 3369
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)