Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0612
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    43   3e-05
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    41   1e-04
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    28   1.0  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   7.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   7.3  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   9.6  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 23/54 (42%), Positives = 33/54 (61%)
 Frame = +1

Query: 97  YDAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMTFEGVQLQGAVKIMEKLI 258
           Y+A+   F Q YY  FD  + R+ L ++   E S ++FEG QLQG   I+EKL+
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLV 54



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 249 KINSLTFQKITXIVTAVXSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSV 422
           K+ SL FQ++   ++ + +QP    G V++ V G L  DE+     Y Q F L     + 
Sbjct: 52  KLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNY 111

Query: 423 YVQHDIFRL 449
           YV +D+FRL
Sbjct: 112 YVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 243 YGKINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSV 422
           + KI  L FQ    +++ V S    +GG++I VLG +         + QTF L    +  
Sbjct: 66  HNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGY 125

Query: 423 YVQHDIFRLGIHDI 464
           +V +DIFR    D+
Sbjct: 126 FVLNDIFRFLREDV 139


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 476 KDRHNTKKCLTEIWYNI 526
           KD HNTKKCL ++  N+
Sbjct: 259 KDDHNTKKCLAQLLINL 275


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 557 GHIIFFLYPFRQRIMELKGL---DGYEIMVMID 646
           GH+ F+ + FR  +M L+G+   D   +M+ +D
Sbjct: 74  GHVSFYRHQFRAELMFLRGIKVADSSVLMLSLD 106


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 557 GHIIFFLYPFRQRIMELKGLDGYEIMVMIDLVI 655
           GHI F+L P RQ +  L  +D   ++  +D VI
Sbjct: 206 GHIEFYLKPTRQTVYRLSEVD--NLVKKLDTVI 236


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 104 ASYCGLSAI*IKMCLFVTPTKSPIPAEKFKM 12
           + Y  + AI I+ C F+T  ++PIP + F +
Sbjct: 21  SKYQSIYAIQIR-CFFLTVNRTPIPKQTFSL 50


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 450  LNGKCRAEHKLNLRVASTRTF 388
            L  KCR EH L L +A ++ F
Sbjct: 1109 LQSKCRREHSLRLDLAFSKKF 1129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,368
Number of Sequences: 5004
Number of extensions: 54229
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)