Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0612
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       47   2e-05
01_06_0963 + 33441731-33442096,33442175-33442270                       38   0.007
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    34   0.087
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    32   0.46 
12_01_0622 + 5124213-5125292,5126820-5128685                           28   7.5  

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 246 GKINSLTFQKITXIVTAVXSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDS 419
           GK+ SL F +    +  V  QP    GG+L+ V G L+   D  P  + Q F L P G +
Sbjct: 50  GKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGN 109

Query: 420 VYVQHDIFRL 449
            YVQ+D+FRL
Sbjct: 110 FYVQNDMFRL 119



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +1

Query: 100 DAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMTFEGVQLQGAVKIMEKL 255
           DA+ K FV+ YY  FD    R  LV++   + S +TFEG Q  GA  I  KL
Sbjct: 4   DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKL 52


>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +1

Query: 94  QYDAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMTFEGVQLQGAVKIMEKLI 258
           Q D + + FV+ YY  FD    RA L  +   +TS ++FEG  + GA +I  KL+
Sbjct: 24  QCDVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLL 75


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 288 VTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQHDIFR 446
           + AV +Q    GGV + V G L   +D    + Q+F L P     +V +DI R
Sbjct: 86  IKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLNDILR 138


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 288 VTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQHDIFR 446
           +  V SQ    GGV + V G L   +     + Q+F L P     +V +D+FR
Sbjct: 78  IKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVLNDMFR 130


>12_01_0622 + 5124213-5125292,5126820-5128685
          Length = 981

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 536 NQNS*HLGHIIFFLYPFRQRIMELKGLDGYEIMV 637
           N NS  LG++   LY +  +  E+ G+D + +MV
Sbjct: 686 NHNSNLLGNLASCLYCYNTQSCEISGMDQFSVMV 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,794
Number of Sequences: 37544
Number of extensions: 329952
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)