Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0612
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  45   5e-05
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 243 YGKINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-- 416
           Y KI  L F      +  V S      GV++ V G L  +  P   +MQTFVL P  D  
Sbjct: 61  YEKIKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDIR 120

Query: 417 SVYVQHDIFR 446
             YV +DIFR
Sbjct: 121 KYYVHNDIFR 130


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/89 (30%), Positives = 47/89 (52%)
 Frame = +1

Query: 16  LNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLFDDPAQRANLVNMXNVET 195
           L+ +A + + V  T         ++  ++ + K FV+ YY++FD  + R NL  +     
Sbjct: 90  LDVAASVEVCVNSTQFFNSFIETMSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PG 146

Query: 196 SFMTFEGVQLQGAVKIMEKLIV*LFKKSL 282
           S +TFEG Q+QG   I+ KL+   F++ L
Sbjct: 147 SMLTFEGAQIQGTEAIVAKLVSMPFQQVL 175



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 13/36 (36%), Positives = 28/36 (77%)
 Frame = +3

Query: 249 KINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLK 356
           K+ S+ FQ++  ++T+  +QP+ +GG+++ V+G+LK
Sbjct: 165 KLVSMPFQQVLHVITSQDAQPLPNGGIIVFVMGQLK 200


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 196 KFQHCXY*QDLPVEPDHRTMCNIVAQNL 113
           KF  C Y +++ VE DH+ +  IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,270,306
Number of Sequences: 59808
Number of extensions: 407986
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)