Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0612
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    69   4e-12
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    30   1.7  
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    30   1.7  
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    30   1.7  
U53139-10|AAK18937.1|  381|Caenorhabditis elegans Serpentine rec...    29   2.9  
U88184-13|AAO38641.1|  354|Caenorhabditis elegans Hypothetical p...    28   5.1  
U88184-12|AAM98020.1|  570|Caenorhabditis elegans Hypothetical p...    28   5.1  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +3

Query: 249 KINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SVY 425
           K  +L F KI   +T + SQP++DG + + VLG+LK DEDP + + Q F+L+P    S +
Sbjct: 61  KFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYF 120

Query: 426 VQHDIFRLGIHD 461
           + ++IFRL +H+
Sbjct: 121 IGNEIFRLDLHN 132



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +1

Query: 79  MALNPQYDAIGKGFVQQYYTLFD--DPAQRA-NLVNMXNVETSFMTFEGVQLQGAVKIME 249
           M+ NP Y+++ K F+Q YY+ FD  D   RA  L ++ + E S+MTFEG Q +G   I++
Sbjct: 1   MSFNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQ 60

Query: 250 KLIV*LFKK 276
           K     F K
Sbjct: 61  KFTTLGFTK 69


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 252 INSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQ 431
           I SL  Q++   VT   S     GG+L+NV G +  D D    + QT +L        V+
Sbjct: 75  IQSLDAQRLPEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVK 129

Query: 432 HDIFR 446
            D FR
Sbjct: 130 SDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 252 INSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQ 431
           I SL  Q++   VT   S     GG+L+NV G +  D D    + QT +L        V+
Sbjct: 69  IQSLDAQRLPEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVK 123

Query: 432 HDIFR 446
            D FR
Sbjct: 124 SDRFR 128


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 252 INSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQ 431
           I SL  Q++   VT   S     GG+L+NV G +  D D    + QT +L        V+
Sbjct: 75  IQSLDAQRLPEGVTGDMS-----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVK 129

Query: 432 HDIFR 446
            D FR
Sbjct: 130 SDRFR 134


>U53139-10|AAK18937.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein69 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 7   EHILNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLF 144
           +H    SA  G+ + +  R +++  ALNP+YDA+ K     Y ++F
Sbjct: 120 DHSRRLSAWYGVMMALM-RFLIVKFALNPKYDALSKPLF-SYLSMF 163


>U88184-13|AAO38641.1|  354|Caenorhabditis elegans Hypothetical
           protein F36H5.2c protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 380 IHANVRVEATRRFS---LCSARHFPFRHP*HSLDHKDRHNTKKCLTEIWYNIQ 529
           + A+V++     FS   L + R F   H    +   +  N   C TE WY++Q
Sbjct: 71  VEAHVKIFMVEEFSRKFLQNERSFLMSHTVRDVSSAEEGNVVFCATEEWYDVQ 123


>U88184-12|AAM98020.1|  570|Caenorhabditis elegans Hypothetical
           protein F36H5.2b protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 380 IHANVRVEATRRFS---LCSARHFPFRHP*HSLDHKDRHNTKKCLTEIWYNIQ 529
           + A+V++     FS   L + R F   H    +   +  N   C TE WY++Q
Sbjct: 287 VEAHVKIFMVEEFSRKFLQNERSFLMSHTVRDVSSAEEGNVVFCATEEWYDVQ 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,200,263
Number of Sequences: 27780
Number of extensions: 315691
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)