Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0612
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.48 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = +2

Query: 389 NVRVEATRR---FSLCSARHFPFRHP*HSLDHKDRHNTKKCLTE---IWYNIQLLNQNS* 550
           N+ VE  RR   F      HF  R+P  S+   +++ TK C TE      N    NQ   
Sbjct: 414 NLTVENNRRNPWFVEFWEHHFQCRYPNASVTPYNKNYTKFCSTEKRLTKQNTAFENQLQF 473

Query: 551 HLGHIIFFLYPFRQRIMEL 607
               ++ F Y FR    EL
Sbjct: 474 VSDAVMAFAYAFRDMHKEL 492


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 273 FEKSNY*FFHNFNSTLQLYSLK 208
           +   NY   H+F STL + S+K
Sbjct: 375 YSSQNYLTVHSFPSTLNIPSVK 396


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 585 NGYKKNIMCPKCQEF 541
           + YK N+ C KC  +
Sbjct: 142 DSYKSNLKCDKCSTY 156


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 373 GGSSSHFNLPXTLIKTPPSNIG 308
           G S    NL   L+  PP N G
Sbjct: 364 GSSIPKLNLSTALMSQPPPNFG 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,873
Number of Sequences: 438
Number of extensions: 4100
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)