Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0612
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta... 46 2e-05
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta... 44 1e-04
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 40 0.002
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 40 0.002
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta... 37 0.014
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 36 0.024
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 34 0.072
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 34 0.072
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 33 0.13
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 33 0.17
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 33 0.22
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 28 6.3
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 27 8.3
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 27 8.3
>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 122
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +1
Query: 100 DAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMTFEGVQLQGAVKIMEKL 255
DA+ K FV+ YY+ FD A R LV++ E S +TFEG ++QG+ I+ KL
Sbjct: 4 DAVAKAFVEHYYSTFD--ANRPGLVSLYQ-EGSMLTFEGQKIQGSQNIVAKL 52
>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 126
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +1
Query: 100 DAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMTFEGVQLQGAVKIMEKL 255
DA+ K FV+ YY+ FD R L + E S +TFEG ++QG I+ KL
Sbjct: 7 DAVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQGVQSIVAKL 55
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 249 KINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYV 428
KI SL ++ T + +Q + GV++ V GRL +++ + Q+F L P +V
Sbjct: 65 KILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFV 124
Query: 429 QHDIFR 446
+D+FR
Sbjct: 125 LNDVFR 130
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 88 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMT 207
+P + +G+ FV+QYY + Q LV+ ++SF+T
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLT 45
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 249 KINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYV 428
KI SL ++ T + +Q + GV++ V GRL +++ + Q+F L P +V
Sbjct: 65 KILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFV 124
Query: 429 QHDIFR 446
+D+FR
Sbjct: 125 LNDVFR 130
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 88 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMT 207
+P + +G+ FV+QYY + Q LV+ ++SF+T
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLT 45
>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 127
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 100 DAIGKGFVQQYYTLFDDPAQRANLVNMXNVETSFMTFEGVQLQGAVKIMEKL 255
+ + FV YY LFD+ R++L ++ N TS +TFEG + G I KL
Sbjct: 10 EEVASAFVNHYYHLFDN--DRSSLSSLYN-PTSLLTFEGQTIYGVDNISNKL 58
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 249 KINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYV 428
KI +L + I+ + V +Q GG ++ V G L + + QTF L P +V
Sbjct: 69 KIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETGYFV 128
Query: 429 QHDIFR 446
+D+FR
Sbjct: 129 LNDMFR 134
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 288 VTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQHDIFR 446
+T+V SQ G+L+ V G L +E P + Q F L P V D+FR
Sbjct: 341 ITSVTSQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDMFR 393
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 34.3 bits (75), Expect = 0.072
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +3
Query: 285 IVTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQHDIFR 446
I+TA SQ + GV+ V G L E + Q+F L PL S +V +D+FR
Sbjct: 78 ILTA-DSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNGSYFVLNDVFR 130
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 243 YGKINSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDS 419
+ + SL F I V + S ++GGVL+ V G +K E ++QTF L P
Sbjct: 58 HNMVMSLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKG 115
Query: 420 VYVQHDIF 443
+V D+F
Sbjct: 116 YFVLSDVF 123
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 252 INSLTFQKITXIVTAVXSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSVYV 428
+ SL F I V + S ++GGVL+ V G +K E ++QTF L P +V
Sbjct: 2 VMSLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFV 59
Query: 429 QHDIF 443
D+F
Sbjct: 60 LSDVF 64
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 288 VTAVXSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSVYVQHDIFR 446
+T+ +Q +GG L+ V G +E + QTF L P +V +DI R
Sbjct: 80 ITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEKGFFVLNDILR 132
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 121 VQQYYTLFDDPAQRANLVNMXNVETSFMTFEG-VQLQ-GAVKIMEKLIV 261
V Y D PAQ NLVN+ ++ S +F G + L G + + KLI+
Sbjct: 488 VHNNYITGDIPAQLGNLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLIL 536
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 125 NNITHCSMIRLNGQILLIXTMLKLHS*PLRE 217
N++TH +I L QI+ + + + LHS P E
Sbjct: 26 NSVTHSEIISLIAQIISLVSSMDLHSQPKPE 56
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 172 QDLPVEPDHRTMCNIVAQNLYRLHR 98
QD PD R C+I ++Y LHR
Sbjct: 273 QDAKAFPDERLYCDICKTSIYDLHR 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,258
Number of Sequences: 28952
Number of extensions: 278875
Number of successful extensions: 509
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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