Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0611
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   5.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   9.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 601 LVFFYVTLHSLGLRLL 648
           +VFF  TLH++G+ LL
Sbjct: 169 IVFFTETLHTVGIALL 184


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 601 LVFFYVTLHSLGLRLL 648
           +VFF  TLH++G+ LL
Sbjct: 169 IVFFTETLHTVGIALL 184


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 601 LVFFYVTLHSLGLRLL 648
           +VFF  TLH++G+ LL
Sbjct: 169 IVFFTETLHTVGIALL 184


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 601 LVFFYVTLHSLGLRLL 648
           +VFF  TLH++G+ LL
Sbjct: 169 IVFFTETLHTVGIALL 184


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 451 LNKVLYNDSIIYCFIKC 501
           ++K+L ND ++  +IKC
Sbjct: 32  VDKILNNDRVLTNYIKC 48


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 222 PLPRPREPRAFSREPSP 272
           P P+PR  +   R+P P
Sbjct: 251 PTPKPRPTKVSRRKPRP 267


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 670 TENEVNYITAAAPNYVMSHKKKLIIFH 590
           T  +V  +    PNY + HK KL  F+
Sbjct: 397 TTRQVRTLYKLPPNYEIRHKFKLWNFN 423


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 266 FSNVLRGTGGAFVLVLYDEI 325
           ++  L  TGG  V+ L DEI
Sbjct: 512 YNRFLAATGGDHVISLIDEI 531


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 216 QQWMVFLYRISLLARPDCIIMRLRTVSK 133
           Q ++ F Y++ L    D I+MR + +++
Sbjct: 156 QNYIHFFYQLLLYLITDMILMRYKELNR 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,798
Number of Sequences: 336
Number of extensions: 3228
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)