Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0611
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   2e-21
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)           45   5e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             43   3e-04
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             37   0.014
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)             37   0.014
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)                   36   0.042
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)                   33   0.17 
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)                   32   0.39 
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)                   31   0.68 
SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)                     28   8.4  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score =   99 bits (238), Expect = 2e-21
 Identities = 52/111 (46%), Positives = 70/111 (63%)
 Frame = +2

Query: 2   YRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIXSYPFDTVRRRMMMQSGRAK 181
           YR  YFG YDT + +L   ++  +VIS+ +   VT  AG+ SYP DT+RRRMMM SG A 
Sbjct: 189 YRGFYFGLYDTLKPILLG-EDAGVVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEA- 246

Query: 182 SDILYKNTIHCWATIAKTEGTSGLLKGAFSNVLRGTGGAFVLVLYDEIKKV 334
             + YK +I C   I K EG   L+KGA +N+LRG  GA VL  +D+ K++
Sbjct: 247 --VKYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGFDKFKEL 295


>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 41/75 (54%)
 Frame = +2

Query: 59  KNTPIVISWAIAQTVTTVAGIXSYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 238
           +  P+            V+   +YP D VRRRM M+  RA  D  YK+T+H +++I K E
Sbjct: 157 RELPVNFKLMCGSLAGAVSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLE 214

Query: 239 GTSGLLKGAFSNVLR 283
           G  GL KG + N+L+
Sbjct: 215 GFRGLYKGMWPNILK 229


>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
          Length = 773

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/72 (34%), Positives = 35/72 (48%)
 Frame = +2

Query: 68  PIVISWAIAQTVTTVAGIXSYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTS 247
           P+V           VA   +YP D VRRRM M+ G       Y +T   +  I ++EG  
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFI 737

Query: 248 GLLKGAFSNVLR 283
           GL KG + N+L+
Sbjct: 738 GLFKGMWPNLLK 749


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 128  YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSGLLKGAFSNVL 280
            YP D V+ RM  Q    +++ +YKN+I C+  + + EG  GL +G    +L
Sbjct: 932  YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 131 PFDTVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTSGLLKGAFSNVLRG-TGGAF 301
           P D  + +M +Q  RA+S   I Y+N  H   TIA+T G  G  +G  + ++R      F
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280

Query: 302 VLVLYDEIKKVL 337
               Y+  K +L
Sbjct: 281 FFGFYEFTKNLL 292


>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
          Length = 187

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 83  WAIAQTVTTVAGIXSYPFDTVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTSGL 253
           + +  T  + A   + P + V+ RM +Q     R    + Y+N  H   TIAK EG   +
Sbjct: 8   FVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAM 67

Query: 254 LKGAF 268
            KG F
Sbjct: 68  QKGLF 72


>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 306

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
 Frame = +2

Query: 2   YRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT--VAGIXSYPFDTVRRRMMMQSGR 175
           Y ++  G Y+  + +L    +T   +   I   V++  +    + P D V+ R   Q+ +
Sbjct: 89  YSSTRLGAYEPIKNLLGATDSTSAALWKKIVAGVSSGVIGSAIATPTDLVKIRF--QAVK 146

Query: 176 AKSDILYKNTIHCWATIAKTEGTSGLLKGAFSNVLRGTG-GAFVLVLYDEIKKVL 337
               I YKN  H +  IAK EG  GL  G    V R        +  YD  K +L
Sbjct: 147 IGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPTVKRAACISGTQIPTYDHTKHLL 201


>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 200

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 125 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSGLLKGAFSNVLRGTGG-A 298
           +YP D VRRRM + +G       Y   I+ + ++   +G   GL +G   N LR     A
Sbjct: 124 AYPLDVVRRRMQL-AGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLRVCPQVA 182

Query: 299 FVLVLYDEIKKVL 337
            +  +Y+ +K++L
Sbjct: 183 VMFAVYEVVKQLL 195


>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 264

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 110 VAGIXSYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSGLLKGAFSNVLR 283
           V+   +YP D VRRRM + +G       Y   I+    + K +G   GL +G   N LR
Sbjct: 185 VSQTIAYPLDVVRRRMQL-AGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLR 242


>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 274

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = +2

Query: 8   ASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIXS-YPFDTVRRRMMMQSGRAKS 184
           A YFG Y+       +   +  V ++ +A     V    S +PFD ++ R+       K 
Sbjct: 110 AVYFGVYELLCDWFSNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGK- 168

Query: 185 DILYKNTIHCWATIAKTEGTSGLLKGAFSNVLRG 286
              YK  + C     K EG     +G +  +LRG
Sbjct: 169 -FRYKGMMDCALQSYKEEGMIVFTRGIWPTLLRG 201


>SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)
          Length = 474

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 208 PLLGYHCQDRGNLGPSQGSLLQRPQRYWWCLRARLV 315
           P+ GY C  RG +GP  G  L +   + W    R V
Sbjct: 306 PVAGYVCAKRGFVGPVLGGALMQYFAFRWTAAVRHV 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,268,168
Number of Sequences: 59808
Number of extensions: 386208
Number of successful extensions: 1093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)