Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0611
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   202   2e-54
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   202   2e-54
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  202 bits (494), Expect = 2e-54
 Identities = 92/112 (82%), Positives = 100/112 (89%)
 Frame = +2

Query: 2   YRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIXSYPFDTVRRRMMMQSGRAK 181
           YRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI SYPFDTVRRRMMMQSGRAK
Sbjct: 189 YRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAK 248

Query: 182 SDILYKNTIHCWATIAKTEGTSGLLKGAFSNVLRGTGGAFVLVLYDEIKKVL 337
           S+ILYK+T+HCWATI KTEG +   KGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 249 SEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 31.1 bits (67), Expect = 0.011
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 128 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSGLLKG 262
           YP D  R R+    G+A  +  +    +C   I K +G +GL +G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 28.7 bits (61), Expect = 0.056
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 86  AIAQTVTTVAGIXSYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSGLLK 259
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G     +
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 260 GAFSNVLR 283
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  202 bits (494), Expect = 2e-54
 Identities = 92/112 (82%), Positives = 100/112 (89%)
 Frame = +2

Query: 2   YRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIXSYPFDTVRRRMMMQSGRAK 181
           YRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI SYPFDTVRRRMMMQSGRAK
Sbjct: 189 YRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAK 248

Query: 182 SDILYKNTIHCWATIAKTEGTSGLLKGAFSNVLRGTGGAFVLVLYDEIKKVL 337
           S+ILYK+T+HCWATI KTEG +   KGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 249 SEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 31.1 bits (67), Expect = 0.011
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 128 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSGLLKG 262
           YP D  R R+    G+A  +  +    +C   I K +G +GL +G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 28.7 bits (61), Expect = 0.056
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 86  AIAQTVTTVAGIXSYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSGLLK 259
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G     +
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 260 GAFSNVLR 283
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 327 LISSYKTSTKAPPVPLRTLEKAPL 256
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 376 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI-KCYIML 513
           D+V+Q   S  + L     L +Y   N  +Y D++I C +  C  ML
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSML 328


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 376 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI-KCYIML 513
           D+V+Q   S  + L     L +Y   N  +Y D++I C +  C  ML
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSML 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,204
Number of Sequences: 438
Number of extensions: 3568
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)