Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0610
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz...    29   0.86 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.6  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.6  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   8.0  
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    25   8.0  

>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 65  SLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINIANFYFERTHFPNCLGS 244
           +L+ +  +   TL+ I+      LW      +    T  D++N+  +Y++ + FP  +  
Sbjct: 40  TLFVKTSLSLLTLNNIVS---APLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAE 96

Query: 245 ID 250
           ID
Sbjct: 97  ID 98


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 173  TEEDWINIANFYFERTHF 226
            T+ +WI ++N  FER HF
Sbjct: 1469 TKNEWIEVSNKLFERGHF 1486


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 482 SGNVADSGKCIWLFKNLLPKFEFLKTLESLFD 387
           SGN+ + GKC+   + LL K +   TLE   D
Sbjct: 313 SGNLGEFGKCLQKNETLLAKTKIYLTLEGTRD 344


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 524  IAYENNGKGPTSS*SGNVADSGKCIWLFKNLLPKFE 417
            I  E     P     G  A+ GK IW+ K++LP  E
Sbjct: 1215 ILSERRAYHPYGMKGGKDAECGKNIWIRKDILPSGE 1250


>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 167 GKTEEDWINIANFYFERTHFPNCLGSIDGNIYE*KGQKI 283
           GK +E  IN+ + Y E+ HF   +G + G I   K Q++
Sbjct: 56  GKPDEV-INVIDEYVEQGHFLMNIGKLKGKIISEKIQQV 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,438
Number of Sequences: 5004
Number of extensions: 70078
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)