Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0610
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0576 - 5130589-5131995 34 0.096
01_01_0621 + 4645583-4646902 33 0.17
05_01_0569 + 5056261-5057712 33 0.22
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 33 0.29
01_05_0479 + 22600823-22602478 31 0.68
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 29 2.7
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 29 3.6
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 29 4.8
04_01_0523 - 6875349-6875444,6876284-6876346,6876431-6876474,687... 29 4.8
03_02_0563 + 9471025-9471093,9471490-9471601,9471944-9472255,947... 29 4.8
07_01_0539 - 3985623-3986653,3986752-3987046 28 6.3
01_06_1026 + 33907465-33907661,33907699-33907741,33907938-339085... 28 6.3
11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750 28 8.4
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 28 8.4
>05_01_0576 - 5130589-5131995
Length = 468
Score = 34.3 bits (75), Expect = 0.096
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = +1
Query: 253 KHIRIERPENTGSEAF-------NYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVF 411
+HI I P E + N K YS+ + A+ DAD FT + G GS SD++V
Sbjct: 245 EHIPIVAPRENAGEYYDRRLTDRNNKATYSVAMQAVVDADGAFTDVCIGHPGSLSDAAVL 304
Query: 412 KNS 420
S
Sbjct: 305 TKS 307
>01_01_0621 + 4645583-4646902
Length = 439
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAF 644
VG +FPLM+ ++ PY ++NL+ Q + N ++ R AF
Sbjct: 308 VGGGSFPLMDWMLVPYTHQNLTWAQHMLNEKVAAVRGVARDAF 350
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 301 NYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNS 420
N K YS+ + + D+ FT + G GSNSD V + S
Sbjct: 251 NQKTSYSMTVQCVVDSTGAFTDVCIGWPGSNSDEEVLEKS 290
>05_01_0569 + 5056261-5057712
Length = 483
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 301 NYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNS 420
N K YS+ + A+ DAD FT + G GS SD+++ S
Sbjct: 282 NNKATYSVAMQAVVDADGAFTDVCIGHPGSLSDAAILAKS 321
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAF 644
VG ++PL E ++ PY RNL+ Q +N + R AF
Sbjct: 728 VGGASYPLTEWMLVPYAQRNLTWTQHAFNEKVGEVRRVATEAF 770
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 301 NYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFGKR 435
N+K YS+ L + D FT + G GS SD V + S +R
Sbjct: 672 NHKTSYSITLQGVVGPDGTFTDVCIGWPGSMSDEQVLRKSALHQR 716
>01_05_0479 + 22600823-22602478
Length = 551
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAF 644
VG ++PLM+ ++ PY ++NL+ Q +N + R AF
Sbjct: 421 VGGASYPLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAF 463
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Frame = +3
Query: 513 FVGDEAFPLMEHLMRPYPNRNLSIKQ----------RVYNYSLSYARXTVECAFGIM 653
++ D +PL E M PY +KQ ++NY S R VE +FG++
Sbjct: 664 YLVDSGYPLREGYMSPYRKTRYHLKQLDTKGPENLHEIFNYQHSCLRNVVERSFGVL 720
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +1
Query: 256 HIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFK 414
HI PEN + K Y + +LA D D FT + G GS DS V K
Sbjct: 255 HIPAFVPENIVNRFRGRKSYPTQNVLAAVDFDLRFTYVLVGWEGSAHDSVVLK 307
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 195 IFIQSSSVFPGIYVGCKHIHKLLHVCSIIS 106
I +Q +S F GI + C+ H L +CS +S
Sbjct: 515 IQVQGNSSFEGIEINCQSDHALYSLCSTMS 544
>04_01_0523 -
6875349-6875444,6876284-6876346,6876431-6876474,
6876578-6876707
Length = 110
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 202 ICYIYPILFCFSRHICRLQTYPQTLACVFNYFTQSCCA 89
+ YI P CF + R T+ Q L CVF CCA
Sbjct: 58 VAYILPCA-CFLAILRRTVTWYQVLLCVFIIVVGLCCA 94
>03_02_0563 +
9471025-9471093,9471490-9471601,9471944-9472255,
9472341-9472783
Length = 311
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 256 HIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNS 420
HI + P + + KY + +LAI D D FT I G GS D VF ++
Sbjct: 97 HIPVVVPASKVVQHVGRNKYPTQNVLAICDFDMRFTFIVAGWPGSAHDMRVFNDA 151
>07_01_0539 - 3985623-3986653,3986752-3987046
Length = 441
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYAR 623
VG+ +PL+ LM PY +LS +N AR
Sbjct: 317 VGNNCYPLLPWLMTPYEGESLSAPMASFNARQKAAR 352
>01_06_1026 +
33907465-33907661,33907699-33907741,33907938-33908512,
33910820-33911693
Length = 562
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 131 SLWICLQPTYMPGKTE-EDWINIANFYFERTHFPNCLG 241
+ W+ +QP Y P + E +++ F R+HFP+ LG
Sbjct: 55 NFWV-MQPDYRPSNSSCEMRVSLLAFRLCRSHFPSALG 91
>11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750
Length = 422
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYN 602
+GD +PL+ L+ PY ++LS + +N
Sbjct: 266 IGDAGYPLLPWLLTPYQEKDLSDSKLEFN 294
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYN 602
+GD ++PL+ LM PY ++LS + +N
Sbjct: 297 LGDASYPLLPWLMTPYREKDLSPAKADFN 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,153
Number of Sequences: 37544
Number of extensions: 378002
Number of successful extensions: 945
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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