Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0610
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26635| Best HMM Match : DUF635 (HMM E-Value=0.018) 84 9e-17
SB_25595| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06) 66 2e-11
SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25) 66 3e-11
SB_46987| Best HMM Match : Sigma70_r4 (HMM E-Value=1.4) 62 3e-10
SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4) 53 3e-07
SB_4275| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_49311| Best HMM Match : Transposase_11 (HMM E-Value=0.27) 43 2e-04
SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_8441| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_29291| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_21257| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53345| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013) 40 0.003
SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2) 39 0.003
SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_13873| Best HMM Match : Transposase_11 (HMM E-Value=2.4) 39 0.003
SB_47884| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_11771| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_57291| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_48458| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_45119| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_6457| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_245| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_13853| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_37435| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.074
SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44) 33 0.23
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0) 33 0.23
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_36811| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=8.1) 32 0.40
SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8) 30 1.6
SB_30507| Best HMM Match : Antimicrobial17 (HMM E-Value=1.4) 30 2.1
SB_34631| Best HMM Match : K_tetra (HMM E-Value=1e-38) 29 2.8
SB_36456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_9923| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5) 29 3.7
SB_28959| Best HMM Match : Metallophos (HMM E-Value=2.8) 28 8.5
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_26635| Best HMM Match : DUF635 (HMM E-Value=0.018)
Length = 345
Score = 84.2 bits (199), Expect = 9e-17
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 KHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFGK 432
KH+ +E P N+GS FNYK +SL+LLA DA YCFTA+D G YG +DS F +S G
Sbjct: 90 KHVVMECPLNSGSNYFNYKGTFSLVLLAYGDARYCFTAVDIGQYGKCNDSGAFSDSVLGY 149
Query: 433 RFLNNQMHLPESATLPDY-EEVGPXP 507
+F NN ++P A L + E G P
Sbjct: 150 KFGNNSFNIPPPAPLHGFCSEDGKAP 175
Score = 79.8 bits (188), Expect = 2e-15
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 EERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPG-KTEEDW 187
EERL TLRYLA+G+S +S F + IG +T+SEII TC ++W L Y+ T ++W
Sbjct: 8 EERLVATLRYLATGDSQQSQSFNFRIGRSTVSEIIRETCSAIWEALHKNYLKSPSTPDEW 67
Query: 188 INIANFYFERTHFPNCLGSIDG 253
IAN + FPNC+G+ DG
Sbjct: 68 QEIANDFESLWDFPNCIGAGDG 89
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 510 VFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGIM 653
V V DE L ++ MRP+P R L+ K+ ++NY LS AR T+E FGI+
Sbjct: 177 VTVVDEGLALRKYQMRPHPGRGLTEKKAIFNYRLSRARRTIENIFGIL 224
>SB_25595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 EERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPG-KTEEDW 187
EERL VTLRYLA+G+S +S F + IG +T+SEII TC ++W L Y+ T ++W
Sbjct: 8 EERLVVTLRYLATGDSQQSQSFNFRIGRSTVSEIIRETCSAIWEALHKNYLKSPSTPDEW 67
Query: 188 INIANFYFERTHFPNCLGSIDG 253
IAN + FP+C+ + DG
Sbjct: 68 QEIANDFESLWDFPHCIEAGDG 89
>SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06)
Length = 628
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 EERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYM-PGKTEEDW 187
EERL VT RYLA+G S +S F + IG +T+S I+ TC ++W L +Y+ T+E+
Sbjct: 97 EERLVVT-RYLATGGSQQSQSFNFRIGKSTVSMIVRETCAAIWEALHESYLKTPSTQEEL 155
Query: 188 INIANFYFERTHFPNCLGSIDG 253
+IAN + + HFP+ +G+ DG
Sbjct: 156 KSIANDFEDIWHFPHSIGAGDG 177
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +1
Query: 253 KHIRIERPENTGSEAFNYKKYYSLILLAIADA 348
KH+ IE P N+GSE +NYK YS++LLA DA
Sbjct: 178 KHVVIECPFNSGSEFYNYKGTYSIMLLAYGDA 209
>SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)
Length = 863
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/96 (36%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Frame = +2
Query: 14 ERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYM-PGKTEEDWI 190
ERL++T+RYLA+G + +SL F++ IG +T+S+I+ C ++ L ++ T E W
Sbjct: 70 ERLALTIRYLATGETFQSLSFQFRIGKSTVSKIVLEVCDVIYHVLGKQHLKTPNTVEIWR 129
Query: 191 NIANFYFERTHFPNCLGSIDGNIYE*KGQKILVQKP 298
IA ++ + + PN +G+ID G++ILV+KP
Sbjct: 130 EIAASFYSKWNIPNNIGAID-------GKRILVEKP 158
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 253 KHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSD 399
K I +E+P + GS +YK S+I L ++ +Y D G G NSD
Sbjct: 151 KRILVEKPPSAGSHYHDYKGNESVIALILSGPNYACLYADIGTNGRNSD 199
>SB_46987| Best HMM Match : Sigma70_r4 (HMM E-Value=1.4)
Length = 252
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Frame = +2
Query: 14 ERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYM-PGKTEEDWI 190
ERL++T+RYLA+G + +SL ++ IG +T+S+I+ C ++ L ++ T E W
Sbjct: 70 ERLALTIRYLATGETFQSLSLQFRIGKSTVSKIVLEVCDVIYHVLGKQHLKTPNTVEIWR 129
Query: 191 NIANFYFERTHFPNCLGSIDGNIYE*KGQKILVQKP 298
IA ++ + + PN +G+ID G++IL+QKP
Sbjct: 130 EIAASFYCKWNIPNNIGAID-------GKRILIQKP 158
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 253 KHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSV 408
K I I++P + GS +YK S+I L ++ +Y D G NSD V
Sbjct: 151 KRILIQKPPSAGSHYHDYKGNESIIALIMSGPNYECLYADISTNGRNSDGHV 202
>SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)
Length = 450
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +3
Query: 489 GSRTFXVVFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGI 650
GS V GDEAFPL +++PYP+++L++++R+ NY +S R E GI
Sbjct: 165 GSSDVNYVITGDEAFPLANFMLKPYPSKSLTVEERIANYRISRGRRISENILGI 218
>SB_4275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +3
Query: 489 GSRTFXVVFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGI 650
GS V GDEAF L +++PYP ++L++++R+ NY +S R E GI
Sbjct: 140 GSSDVNYVITGDEAFTLANFMLKPYPRKSLTVEERIANYRISRGRRISENMLGI 193
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 489 GSRTFXVVFVGDEAFPLMEHLMRPYP 566
GS V GDEAF L +++PYP
Sbjct: 63 GSSDVNYVITGDEAFTLANFMLKPYP 88
>SB_49311| Best HMM Match : Transposase_11 (HMM E-Value=0.27)
Length = 357
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +3
Query: 489 GSRTFXVVFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
G T + +GD AFP+ LM+PY + +QR +NY LS AR E A+G
Sbjct: 271 GVVTVPPLILGDSAFPIKPWLMKPYTCSRPTNQQRYFNYRLSRARMVREGAYG 323
>SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +2
Query: 14 ERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEII 115
ER++VTLRYLA+G S KSL F+ I T +S II
Sbjct: 253 ERMAVTLRYLATGESFKSLQFQIRISRTAISAII 286
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +1
Query: 250 WKHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFG 429
++ I +++PEN+GS ++YK +IL+A Y D G G SD +V+ +
Sbjct: 288 YERIAMKQPENSGSHYYDYKGNNIVILMAAVGPRYEILWADVGVNGRASDGTVWNKCSVK 347
Query: 430 KRFLNNQMHLPES 468
+N+ L ++
Sbjct: 348 NALASNENPLQKN 360
>SB_8441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 510 VFVGDEAFPLMEHLMRPYP-NRNLSIKQRVYNYSLSYARXTVECAFGIM 653
+ VGD+ F L L R YP +R+ + Q+V+NY LS AR +E F I+
Sbjct: 19 LLVGDDIFGLQTWLQRSYPRSRSPTEDQQVHNYRLSRARRVIENTFAIL 67
>SB_29291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD A+PL L PY + +L+ Q +N S+S R VE FG
Sbjct: 205 GDPAYPLRVQLQAPYKHAHLTADQEAFNSSMSKVRSAVEWVFG 247
>SB_21257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD A+PL L PY + +L+ Q +N S+S R VE FG
Sbjct: 258 GDPAYPLRVQLQAPYKHAHLTADQEAFNSSMSKVRSAVEWVFG 300
>SB_53345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +2
Query: 26 VTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINIANF 205
V LRY ASGN ++ + + + +T+S I K+L + + ++ ++E+ I
Sbjct: 221 VALRYFASGNFLEVIGDTFGLPKSTVSRCITDVSKAL-VANKEEFIAWPSDEEKRQIKEA 279
Query: 206 YFERTHFPNCLGSIDG 253
+F + FP +G IDG
Sbjct: 280 FFAKKGFPGVIGCIDG 295
Score = 34.3 bits (75), Expect = 0.098
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 510 VFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGI 650
V +GD + LM P+P+ KQ YN +L R +E FGI
Sbjct: 368 VLIGDSGYGCKPFLMTPFPHPETP-KQEAYNEALGKTRVKIEQTFGI 413
>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
Length = 427
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +2
Query: 26 VTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINIANF 205
V LRY ASGN ++ + + + +T+S I K+L + + ++ ++E+ I
Sbjct: 181 VALRYFASGNFLEVIGDTFGLPKSTVSRCITDVSKAL-VANKEEFIAWPSDEEKRQIKEA 239
Query: 206 YFERTHFPNCLGSIDG 253
+F + FP +G IDG
Sbjct: 240 FFAKKGFPGVIGCIDG 255
Score = 34.7 bits (76), Expect = 0.074
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 510 VFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGI 650
V +GD + LM P+P+ + KQ YN +L R +E FGI
Sbjct: 328 VLIGDNGYGCKPFLMTPFPHPDTP-KQEAYNEALGKTRVKIEQTFGI 373
>SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2)
Length = 347
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAF 644
GD A+PL + P+ RNL +Q ++N S+S R VE F
Sbjct: 245 GDPAYPLRAQMKCPFRGRNLQAQQELFNLSMSKVRTAVEWVF 286
>SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
VG+ A+PL+ +LM+ Y N +++++ + L +R +E AFG
Sbjct: 253 VGNPAYPLVPYLMKEYSNGGATVQEQYFGLKLCQSRMVIEFAFG 296
>SB_13873| Best HMM Match : Transposase_11 (HMM E-Value=2.4)
Length = 200
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD A+P+ HL PY L+ Q+ +N S+ R +VE FG
Sbjct: 98 GDPAYPMRVHLQAPYRGNGLTPAQQAFNDSMCKVRTSVEWVFG 140
>SB_47884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD A+P+ HL PY L+ Q +N S+ R +VE FG
Sbjct: 35 GDPAYPMRVHLQAPYRGNGLTPAQEAFNDSMCKVRTSVEWVFG 77
>SB_11771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD +PL L PY + +L+ Q +N S+S R VE FG
Sbjct: 27 GDPVYPLRVQLQAPYKHAHLTADQEAFNSSMSKVRSAVEWVFG 69
>SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGIMAN 659
GD A+PL HL P+ N L+ YN +S R +VE FG + N
Sbjct: 323 GDPAYPLRVHLQAPFRNGVLTPMMEEYNSRMSSVRSSVEWLFGEIIN 369
>SB_57291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD +PL L PY + +L+ Q +N S+S R VE FG
Sbjct: 27 GDPVYPLRVQLQAPYKHAHLTADQEAFNSSMSKVRSAVEWVFG 69
>SB_48458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGIMAN 659
GD A+PL HL P+ N L+ YN +S R +VE FG + N
Sbjct: 27 GDPAYPLRVHLQAPFRNGVLTPMMEEYNSRMSSVRSSVEWLFGEIIN 73
>SB_45119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD +PL L PY + +L+ Q +N S+S R VE FG
Sbjct: 27 GDPVYPLRVQLQAPYKHAHLTADQEAFNSSMSKVRSAVEWVFG 69
>SB_6457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGIMAN 659
GD A+PL HL P+ N L+ YN +S R +VE FG + N
Sbjct: 35 GDPAYPLRVHLQAPFRNGVLTPMMEEYNSRMSSVRSSVEWLFGEIIN 81
>SB_245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGIMAN 659
GD A+PL HL P+ N L+ YN +S R +VE FG + N
Sbjct: 40 GDPAYPLRVHLQAPFRNGVLTPMMEEYNSRMSSVRSSVEWLFGEIIN 86
>SB_13853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD A+P+ HL PY L+ +N S+ R +VE FG
Sbjct: 256 GDPAYPMRVHLQAPYRGNGLTPAHEAFNDSMCKVRTSVEWVFG 298
>SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 256 HIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFGKR 435
H++++ P N ++ N K +S+ + A+ D FT I GS D+ +F+NS+
Sbjct: 90 HVKLQAPTNHENDYVNRKGQHSINVQAVCDNKGLFTNIVARWPGSTHDAFIFRNSSIQNT 149
Query: 436 FLNNQMHLPESATLPD 483
+ E L D
Sbjct: 150 LEREHTRIDEGYLLGD 165
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGI 650
+GD +P LM+PYPN + Q +N + S R +E FG+
Sbjct: 163 LGDSGYPCRPFLMKPYPN-PANQHQEDFNEAHSKTRVKIEQCFGL 206
>SB_37435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
GD A+PL L P + +L Q +N S+S R VE FG
Sbjct: 262 GDPAYPLRVQLQAPCKHAHLIADQEAFNSSMSKVRLAVEWVFG 304
>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2061
Score = 34.7 bits (76), Expect = 0.074
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +1
Query: 256 HIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFGKR 435
H++++ P+N ++ N K ++ + A+ D FT I GS D+ +F+NS+
Sbjct: 1871 HVKLQAPDNLENDYVNRKGQPNINVQAVCDNKGLFTNIVARWPGSTHDAFIFRNSSIQNT 1930
Query: 436 FLNNQMHLPESATLPD 483
+ E L D
Sbjct: 1931 LEREHTRIDEGYLLGD 1946
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGI 650
+GD +P LM PYPN + Q +N + S R +E FG+
Sbjct: 1944 LGDSGYPCRPFLMTPYPN-PANQHQEDFNEAHSKTRVKIEQCFGL 1987
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/76 (22%), Positives = 38/76 (50%)
Frame = +2
Query: 26 VTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINIANF 205
V LR+ ASG+ ++ + + + +T+S + ++L + ++ + E I
Sbjct: 1795 VALRFYASGSFLQIIGDTFGLPKSTVSRCVSDVTRAL-VSKADRFIKWPSRERQREIKQA 1853
Query: 206 YFERTHFPNCLGSIDG 253
++++ FP +G IDG
Sbjct: 1854 FYDKHGFPGVIGCIDG 1869
>SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44)
Length = 248
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFGIMAN 659
GD A+PL HL P+ L+ + +N S+S R +VE F + N
Sbjct: 146 GDPAYPLHNHLQAPFRMGVLNGPMQDFNESMSSVRISVEWLFADIIN 192
>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 535
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 602 VINSLFYG*IS-IWIWPH*VLHKWKSFIAYENNGKGP 495
V SLF G I+ +WIW H ++ W++F Y+ +GK P
Sbjct: 483 VFMSLFTGVITGMWIWSHKTMNTWRAFY-YKVSGKRP 518
>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +2
Query: 26 VTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINIANF 205
V LRY ASGN ++S T+S I K L + ++ ++E+ I
Sbjct: 1341 VALRYFASGNFLES----------TVSRCITDVSKEL-VANNKEFIAWPSDEEKTQIKKS 1389
Query: 206 YFERTHFPNCLGSIDG 253
+F + FP +G IDG
Sbjct: 1390 FFAKKGFPGVIGCIDG 1405
>SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +2
Query: 14 ERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWIN 193
+R+ V L LA+ + +++ + I ++ I + C S+ + Y+ E+
Sbjct: 16 KRVGVALWRLATNSDYRTIGHLFGISDASVCHITQEFCSSVVNNMLQDYIKIPVGEELDK 75
Query: 194 IANFYFERTHFPNCLGSIDGN 256
+ + + FP C+G+IDG+
Sbjct: 76 VVAEFKHKWGFPQCVGAIDGS 96
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 256 HIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFG 378
HI ++ P ++ +N K +YS+IL + D+ Y F I+ G
Sbjct: 97 HIPVKAPIEFHADYYNRKGWYSIILQGVVDSRYRFIDINVG 137
>SB_36811| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=8.1)
Length = 249
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTV 632
GD +PL L PY + +L+ Q +N S+S R V
Sbjct: 211 GDPVYPLRVQLQAPYKHAHLTADQEAFNSSMSKVRSAV 248
>SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8)
Length = 183
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 38/76 (50%)
Frame = +2
Query: 26 VTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINIANF 205
V LR+ ASG+ ++ + + + +T+S + ++L + ++ + E I
Sbjct: 76 VALRFYASGSFLQIIGDTFGLPKSTVSRCVSDVTRAL-VSKAYRFIKWPSRERQREIKQA 134
Query: 206 YFERTHFPNCLGSIDG 253
++++ FP +G IDG
Sbjct: 135 FYDKHGFPGVIGCIDG 150
>SB_30507| Best HMM Match : Antimicrobial17 (HMM E-Value=1.4)
Length = 86
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
VGD AFP L++ Y + + +N L AR E A+G
Sbjct: 30 VGDAAFPPSSWLLKAYSDTTTDAAENNFNKKLRAARVVSEHAYG 73
>SB_34631| Best HMM Match : K_tetra (HMM E-Value=1e-38)
Length = 418
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 489 GSRTFXVVFVGDEAFPLMEHLMRPYPNRNLSIKQRVYNY 605
G V+ VG + F EH + YPN L ++R +Y
Sbjct: 31 GEERIVVINVGGKRFETYEHTLNKYPNTLLGSQERRQSY 69
>SB_36456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYN 602
GD A+P+ HL PY L+ Q+ +N
Sbjct: 34 GDPAYPMRVHLQAPYRGNGLTPAQQAFN 61
>SB_9923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYN 602
GD A+P+ HL PY L+ Q+ +N
Sbjct: 205 GDPAYPMRVHLQAPYRGNGLTPAQQAFN 232
>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
Length = 348
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 250 IYGTKTIRKMCSFKIKICYIYPILFCFSRHICRLQTYPQTLACVFNYFTQSCCADQIFKI 71
+YG +R +C+F + Y Y IL + + R+ Y C + F CA IF++
Sbjct: 41 VYGYSLLR-VCAFSVFRVYTYSILRVCAYSVLRVCAYSVFRVCASSVF--RVCAYSIFRV 97
>SB_28959| Best HMM Match : Metallophos (HMM E-Value=2.8)
Length = 597
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 283 TGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSS 405
+G+E F+ +K L+L A + CF ++ N DS+
Sbjct: 193 SGTECFSIRKGILLVLQAFKEWTLCFEVMEINLEDQNKDSN 233
>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 41 LASGNSIKSLYFE-YLIGTTTLSEIIEHTCKSLWICLQPTYMPGKT 175
+ G++++ LY + Y T +++E TCK+L I QP+ KT
Sbjct: 319 ILKGDNVEKLYTKAYSCATGHAYDLVEMTCKTLPIESQPSTTTPKT 364
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,285,519
Number of Sequences: 59808
Number of extensions: 472844
Number of successful extensions: 1085
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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