Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0610
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical pr...    67   1e-11
AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical...    48   7e-06
Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z74043-3|CAA98546.1|  125|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical
           protein F57G4.9 protein.
          Length = 231

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 31/70 (44%), Positives = 47/70 (67%)
 Frame = +1

Query: 253 KHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFGK 432
           KHIRI+ P ++GS  FNYK ++S +LL + DAD     +D G+ GSN+D+S+F +S   K
Sbjct: 35  KHIRIKAPPHSGSLFFNYKHFFSFVLLVVVDADGRVIWVDVGSPGSNNDASIFSDSKL-K 93

Query: 433 RFLNNQMHLP 462
             L+ + +LP
Sbjct: 94  TILDEEANLP 103


>AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical
           protein F14D2.9 protein.
          Length = 658

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/77 (32%), Positives = 39/77 (50%)
 Frame = +1

Query: 253 KHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFGK 432
           KH R E P  +G+  +NYK ++S   L ++D+DY    +     G NSD+ +++N     
Sbjct: 456 KHWRCEHPPKSGALNYNYKGFFSFNSLIVSDSDYRILFVQMCKNGLNSDAQLYQNGPL-P 514

Query: 433 RFLNNQMHLPESATLPD 483
           R L   +      TLPD
Sbjct: 515 RLLTKAIENVGYRTLPD 531



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +3

Query: 516 VGDEAFPLMEHLMRPY-PNR-NLSIKQRV-YNYSLSYARXTVECAFGIMAN*MGVF 674
           + D  F L + +M+PY P +  L+ ++ + +N+ LS  R  VE  FG++ +   +F
Sbjct: 541 LADNGFGLHKSMMQPYRPTQIGLNPEENISFNFKLSGTRVKVENVFGVLTSKFHIF 596


>Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical
           protein F59A1.15 protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = -3

Query: 306 VIEGF*TSIFWPFYSYMFPSMEPRQLGKCVLSK*KFAIFIQS---SSVFPGIYVGCKHIH 136
           V +G  T +   F+ +   ++ PR+L  C L     A F+ +   S +   IYV  +   
Sbjct: 142 VPKGELTIVMDTFFMFATTTLSPRKLVMCCLGFVSTAYFVMAHFDSQIQMSIYVS-QIFS 200

Query: 135 KLLHVCSIISLRVVVPIKYSKYKDFILLPLAR 40
           ++  + ++I++   VP KY +    ILL + R
Sbjct: 201 EIYRIVALITIAESVP-KYHRMPALILLEIVR 231


>Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical
           protein F40G12.10 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 482 SGNVADSGKCIWLFKNLLPKFEFLKTLESLFDP 384
           SGNV +  K + ++  LL K +F KT+E  F P
Sbjct: 115 SGNVKNVEKGVKVWIELLEKMDFRKTMEPEFKP 147


>Z74043-3|CAA98546.1|  125|Caenorhabditis elegans Hypothetical
           protein T19B10.4b protein.
          Length = 125

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 385 GSNSDSSVFKNSNFGKRFLNNQMHLPESATL-PDYEEVGP 501
           G+N ++   KN N G R  N Q H P    + P +  +GP
Sbjct: 38  GNNQNNKNNKNQNGGNRNQNRQHHQPPMMQMVPPFGPMGP 77


>Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical
           protein T19B10.4a protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 385 GSNSDSSVFKNSNFGKRFLNNQMHLPESATL-PDYEEVGP 501
           G+N ++   KN N G R  N Q H P    + P +  +GP
Sbjct: 38  GNNQNNKNNKNQNGGNRNQNRQHHQPPMMQMVPPFGPMGP 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,035,720
Number of Sequences: 27780
Number of extensions: 377811
Number of successful extensions: 1015
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)