Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0610
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 177 SVFPGIYVGCKHIHKLLHVCSIISLRVVVPIKYSKYK 67
           S+FPG  + CK    LL+    ++ +   P +   YK
Sbjct: 98  SLFPGNALSCKETFSLLYYEFDVATKEPPPWETDSYK 134


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 262 RIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSN 393
           R++R      +   Y    S+ L    + DY F  ++F   G+N
Sbjct: 530 RMDRMNRMNRQMNEYMMALSMKLQKFINNDYNFNEVNFRILGAN 573


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 WFRSLQLQKVLFFNIISYS*CRLLLYCYRFWGIWI 389
           W R L+ +K LF  I+ +    + L+C    G+++
Sbjct: 407 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMYV 441


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 WFRSLQLQKVLFFNIISYS*CRLLLYCYRFWGIWI 389
           W R L+ +K LF  I+ +    + L+C    G+++
Sbjct: 460 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMYV 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,995
Number of Sequences: 438
Number of extensions: 4947
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)