Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0610
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12010.1 68418.m01404 expressed protein                             39   0.003
At4g29780.1 68417.m04241 expressed protein                             39   0.003
At2g10980.1 68415.m01174 expressed protein                             32   0.43 
At3g55350.1 68416.m06147 expressed protein                             31   0.57 
At2g20240.1 68415.m02365 expressed protein                             29   2.3  
At1g26120.1 68414.m03188 esterase-related contains similaity to ...    29   3.0  
At3g19120.1 68416.m02428 expressed protein                             28   5.3  
At1g70630.1 68414.m08141 expressed protein                             28   7.0  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    27   9.2  
At1g24370.1 68414.m03073 hypothetical protein contains Pfam prof...    27   9.2  

>At5g12010.1 68418.m01404 expressed protein
          Length = 502

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/78 (24%), Positives = 42/78 (53%)
 Frame = +2

Query: 14  ERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWIN 193
           +R++V +  LA+G  ++ +  ++ +G +T  +++   CK++   L P Y+    +E   N
Sbjct: 212 QRVAVCIWRLATGEPLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWPDDESLRN 271

Query: 194 IANFYFERTHFPNCLGSI 247
           I   +   +  PN +GS+
Sbjct: 272 IRERFESVSGIPNVVGSM 289



 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 519 GDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAFG 647
           G    PL++ ++ PY  +NL+  Q  +N  +S  +   + AFG
Sbjct: 373 GGPGHPLLDWVLVPYTQQNLTWTQHAFNEKMSEVQGVAKEAFG 415


>At4g29780.1 68417.m04241 expressed protein
          Length = 540

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +2

Query: 14  ERLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWIN 193
           +R+ V +  LA+G  ++ +   + +G +T  +++   C++++  L P Y+   ++ + IN
Sbjct: 250 KRVGVCVWRLATGAPLRHVSERFGLGISTCHKLVIEVCRAIYDVLMPKYLLWPSDSE-IN 308

Query: 194 IANFYFERTH-FPNCLGSI 247
                FE  H  PN +GSI
Sbjct: 309 STKAKFESVHKIPNVVGSI 327



 Score = 35.5 bits (78), Expect = 0.035
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECAF 644
           VG+  FPL ++L+ PY  +NL+  Q  +N S+   +     AF
Sbjct: 410 VGNSGFPLTDYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAF 452


>At2g10980.1 68415.m01174 expressed protein 
          Length = 270

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +2

Query: 17  RLSVTLRYLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWICLQPTYMPGKTEEDWINI 196
           + + T+R  A G +  ++     IG TT  E +   CK +    +  Y+   T++D   I
Sbjct: 67  KYTTTMRMFAYGVAADAVDEYSKIGGTTTLECLRRFCKGIIKLYETEYLRAPTQDDLQRI 126

Query: 197 ANFYFERTHFPNCLGSID 250
                E   FP  +GSI+
Sbjct: 127 LR-VSEMRGFPGIIGSIN 143


>At3g55350.1 68416.m06147 expressed protein
          Length = 406

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 516 VGDEAFPLMEHLMRPYPNRNLSIKQRVYNYSLSYARXTVECA 641
           VGD  FPL+  L+ PY  +  S+ Q  +N   S A    + A
Sbjct: 277 VGDSGFPLLPWLLTPYQGKPTSLPQTEFNKRHSEATKAAQMA 318


>At2g20240.1 68415.m02365 expressed protein 
          Length = 713

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 38  YLASGNSIKSLYFEYLIGTTTLSEIIEHTCKSLWIC 145
           Y+    S+    +EYL+G  T SEI+  + +  W C
Sbjct: 278 YMGDDCSLNRSNYEYLVGNITNSEIMSPSSRHSWDC 313


>At1g26120.1 68414.m03188 esterase-related contains similaity to
           esterase 6 GI:606998 from [Drosophila simulans] and
           esterase GI:12584120 from [Sphingomonas elodea]
          Length = 476

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 286 GSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSNFGKRFLNNQMHLPE 465
           G+    YK + SL+   +++ D     ID+  +   S S + K+++ G  F+ N  H+ E
Sbjct: 215 GAWIIGYKAWGSLLGQQLSERDIIVACIDYRNFPQGSISDMVKDASSGISFVCN--HIAE 272

Query: 466 SATLPD 483
               PD
Sbjct: 273 YGGDPD 278


>At3g19120.1 68416.m02428 expressed protein
          Length = 446

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 516 VGDEAFPLMEHLMRPY-PNRNLSIKQRVYNYSLSYARXTVECAFGIM 653
           VGD  +PL+  LM P+ PN + +  + +++  L   R  V  A G++
Sbjct: 317 VGDWCYPLLSFLMTPFSPNGSGTPPENLFDGMLMKGRSVVVEAIGLL 363


>At1g70630.1 68414.m08141 expressed protein
          Length = 537

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 425 KFEFLKTLESLFDPYAPKSIA 363
           +F  L+ L   FDPYAPK+I+
Sbjct: 314 QFSILQGLPVFFDPYAPKNIS 334


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1132

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +2

Query: 116  EHTC----KSLWICLQPTYMPGKTEEDWINIANFYFERTHFPNCL 238
            EH C    K+ W+ L+     G+   DW N+  F  ER   P  L
Sbjct: 1079 EHVCLAYEKNRWVNLRRECFAGEDVGDWKNVVRFCGERKVRPEIL 1123


>At1g24370.1 68414.m03073 hypothetical protein contains Pfam
           profiles PF04776: Protein of unknown function (DUF626),
           PF04827: Protein of unknown function (DUF635)
          Length = 413

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 247 RWKHIRIERPENTGSEAFNYKKYYSLILLAIADADYCFTAIDFGAYGSNSDSSVFKNSN 423
           +WK+     P   G +     +  ++IL A+AD D       FG  GSN+D +V + S+
Sbjct: 81  KWKNC----PTAWGGQYAGRSRSPTIILEAVADYDLWIWHAYFGLPGSNNDINVLEASH 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,604
Number of Sequences: 28952
Number of extensions: 338099
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)