Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0608
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   4.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.6  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   8.0  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   8.0  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 245 MLTLKGLWFNRGWRTLTSWTWLFLISSLLKYNCCW 141
           + T   LW +  W  L +W WL ++  L +  CC+
Sbjct: 460 IFTFVALWHDISWE-LFAWGWLIVLFILPERLCCF 493


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 279 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 404
           ++IFL P    +G+    +D W+ F+    E DW       G N +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 56  DKLYFDGVKITDVKVDKLTTFFENFEFD 139
           D+L FD +K   + V  L  F  +FEFD
Sbjct: 283 DRLSFDNIKPALICVGHLLQFCSSFEFD 310


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 640  NKRFERSQXLAFVVEWIDENKELEWEXTXSTSRQHESFRHVTELSDISKGTXP 482
            NK +ER    A VVE       +E E   S  +++       +  D  KGT P
Sbjct: 989  NKTYERENIDAGVVESFVVGTNIEGEQYASELKENSLLTGELKFGDCEKGTVP 1041


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 160 SKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDLMSPVT 273
           SK+  ++NH  +  V QP+   +P   +      SPVT
Sbjct: 467 SKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVT 504


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 416 RIADNLVLTSGEFSCEPV 363
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,847
Number of Sequences: 5004
Number of extensions: 51285
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)