Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0608
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     31   0.89 
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   2.7  
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853...    28   6.3  
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123...    28   6.3  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   8.3  

>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 464 NFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL*C 327
           +F HW     K +KF R  DNL+L   +      QL  FH + L C
Sbjct: 54  DFKHW-----KVEKFARFVDNLLLIRSKVDLHTFQLYWFHYLPLNC 94


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 360 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 473
           +D F T +T    KI RNS +F     DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>07_03_0108 +
           13481249-13481464,13484556-13484693,13485320-13485388,
           13485462-13485599,13485685-13485802,13486265-13486347,
           13486921-13487013,13487801-13487969,13488056-13488129,
           13488448-13488633,13490009-13490101,13490469-13490534,
           13490618-13490785,13491199-13491319,13492072-13492141,
           13492389-13492476,13492565-13492685,13492964-13493157,
           13493239-13493347,13493488-13493643,13493858-13493957,
           13494115-13494288,13494549-13494694,13494796-13494860,
           13495013-13495018
          Length = 986

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 217 LNHSPFNVNIEVDLMSPVTLLSKSSWLPNTMTTXYLSH 330
           L+H P++   E + +  + LL +   LP+  T  YLSH
Sbjct: 527 LDHEPWSFGEECEEVCRLALLRRYRLLPHIYTLFYLSH 564


>05_01_0177 +
           1231679-1231753,1232259-1232546,1232608-1232685,
           1233458-1233673,1233862-1233981,1234079-1234804
          Length = 500

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 215 RGWRTLTSWTWLFLISSLLKYNCCWRRIQSSRRMLSIYR 99
           RG+    + +WLF+ S+   Y+C    I  +RR L   R
Sbjct: 118 RGYLLSENSSWLFISSAAFIYHCVGANITKARRALRALR 156


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +3

Query: 408 RNSNEFVIFKEDSVPMTEIMKMLD 479
           RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,784
Number of Sequences: 37544
Number of extensions: 326747
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)