Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0608
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)               30   2.1  
SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)                 30   2.1  
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                30   2.1  
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)                30   2.1  
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 30   2.1  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)                    30   2.1  
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)          30   2.1  
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)                  29   3.7  
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_39388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 219 SWLRLFKLDWPSMKLVEGKNTALSDLTE 246


>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
          Length = 425

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 377 SWLRLFKLDWPSIKLVQGKNTALSDLTE 404


>SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 76  SWLRLFKLDWPSIKLVQGKNTALSDLTE 103


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 293 SWLRLFKLDWPSIKLVQGKNTALSDLTE 320


>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
          Length = 877

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 76  SWLRLFKLDWPSIKLVQGKNTALSDLTE 103


>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 797

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 287 SWLRLFKLDWPSIKLVQGKNTALSDLTE 314


>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
          Length = 522

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 164 SWLRLFKLDWPSIKLVQGKNTALSDLTE 191


>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 15  SWLRLFKLDWPSIKLVQGKNTALSDLTE 42


>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1122

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 399 SWLRLFKLDWPSIKLVQGKNTALSDLTE 426


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 467 SWLRLFKLDWPSIKLVQGKNTALSDLTE 494



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339  NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
            +W++ F+LDW + KL  G+N  + +  E
Sbjct: 1117 SWLRLFKLDWPSIKLVQGKNTALSDLTE 1144


>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
          Length = 837

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 143 SWLRLFKLDWPSMKLVEGKNTALSDLTE 170


>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
          Length = 1217

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 176 SWLRLFKLDWPSIKLVQGKNTALSDLTE 203


>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
          Length = 419

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+LDW + KL  G+N  + +  E
Sbjct: 349 SWLRLFKLDWPSIKLVQGKNIALSDLTE 376


>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+L+W + KL  G+N  + +  E
Sbjct: 344 SWLRLFKLEWPSIKLVQGKNTALSDLTE 371



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 339 NWMKFFELDWFTTKLTAGQNKIIRNSNE 422
           +W++ F+L+W + KL  G+N  + +  E
Sbjct: 827 SWLRLFKLEWPSIKLVQGKNTALSDLTE 854


>SB_39388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -2

Query: 302 FGSQEDFDNSV-TGDIRSTSMLT 237
           FGS+E+F+N++  GDI+S+S  T
Sbjct: 155 FGSEEEFENTLPNGDIQSSSQQT 177



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -2

Query: 302 FGSQEDFDNSV-TGDIRSTSMLT 237
           FGS+E+F+N++  GDI+S+S  T
Sbjct: 216 FGSEEEFENTLPNGDIQSSSQQT 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,521,438
Number of Sequences: 59808
Number of extensions: 389083
Number of successful extensions: 823
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)