Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0608
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    33   0.20 
Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -2

Query: 494 RYFXFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 333
           +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261


>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 47  YTQDKLYFDGVKITDVKVDKLTTFFENFEFDASNNCTLVK 166
           Y   K    G+ ++   +DKL    ENFEF A N  T  K
Sbjct: 119 YPHHKYILHGLNLSAAYIDKLPRNDENFEFRAFNTSTYPK 158


>Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 387 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 506
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 387 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 506
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical
           protein T24D5.1 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 329 CERYXVVIVFGSQ---EDFDNSVTGDIRSTSMLTLKGLWFNRGWRTLTSWTWLF 177
           CE+  VVI FG Q   ED DNSV       S++      +  G +   S+ ++F
Sbjct: 5   CEQKKVVIAFGIQQNFEDLDNSVLSAQSLQSVVGTFSTKYRNGQKARGSYYFIF 58


>Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical
           protein R01H10.7 protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 387 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMSESSVTCLK 530
           AG N   RNS E +  K D     EI K  ++  + +D+S ++  C K
Sbjct: 4   AGPNTC-RNSGEPLRQKMDEDNANEIFKAFNKQNIEYDLSGTATVCYK 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,317
Number of Sequences: 27780
Number of extensions: 295471
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)