Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0608
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30170.1 68414.m03688 hypothetical protein contains Pfam prof...    29   4.0  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    29   4.0  
At2g33350.1 68415.m04088 hypothetical protein                          28   6.9  

>At1g30170.1 68414.m03688 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 354 FELDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDE-GKVPFDMSESSVTCLK 530
           F + W+     A  +KI   +  F++F+E+       M   D+ G +   +S+S   C+ 
Sbjct: 254 FLVKWYAKGCLASSSKITYETQRFMVFREEETTEERFMCYTDDIGDLCIFVSKSEAFCVP 313

Query: 531 DS 536
            S
Sbjct: 314 AS 315


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 308 IVFGSQEDFDNSVTGDIRSTSML 240
           I+F SQ+DFDN +T  I  +S +
Sbjct: 85  IIFDSQDDFDNDITASIDFSSSI 107


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 308 IVFGSQEDFDNSVTGDIRSTS 246
           I+F SQEDF+N +T  I  +S
Sbjct: 127 IIFDSQEDFENDITASIDFSS 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,886
Number of Sequences: 28952
Number of extensions: 267168
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)