Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0606
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    26   4.1  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   4.1  

>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 58  ATFTETPLQRHVSLIIRRPHDKIMITFDD 144
           A +  T + +H+S II R + K +ITFD+
Sbjct: 112 AKWDPTDVAKHISQIIERYNIKTLITFDN 140


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 528 FKFPEPLNHNFI 493
           +K P PLNHNFI
Sbjct: 60  YKVPHPLNHNFI 71


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 481 LDLESVPIPPILRYIKCCM*SRIVN 407
           LD++S  IP  L+YI+C M +R +N
Sbjct: 97  LDVDSTYIPLWLKYIECEMKNRNIN 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,654
Number of Sequences: 5004
Number of extensions: 34303
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)