Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0606
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688     30   1.8  
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684...    28   7.4  

>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
          Length = 241

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 185 ERSIILNQSKRNRNRKQWGVXRAGRVARTGWGGGE 289
           E  + L    R R  K+W   RAGR    G GGG+
Sbjct: 35  EEEVELGGGGRRRGSKRWSKKRAGRGGYGGGGGGK 69


>07_03_0276 +
           16166528-16166796,16166824-16167291,16168048-16168414,
           16168565-16168587,16170094-16170385
          Length = 472

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 43  ATKKNATFTETPLQRHVSLIIRRPHDKIMITFDDDSANVTCASHDVQREKHNIKSEQAKS 222
           ATK        P    V LI+   + K ++ +D ++   +CA    QR+K  ++ +  K 
Sbjct: 290 ATKYKTINGPEPGSYFVQLILDDDNKKFLVHYDINNETYSCACKKFQRDKIAVR-QAVKR 348

Query: 223 KSKTM 237
           KS+ +
Sbjct: 349 KSQVI 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,773
Number of Sequences: 37544
Number of extensions: 221586
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)