Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0606
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  29   2.5  
SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  

>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 1   RHEHTVSRSDDKINATKKNATFTETPLQRHVSLI-IRRPHDKIMITFDDDSANVTCASHD 177
           R+E+ +  S + +N T +NA   E       SL    R H + +   DD  A    +  +
Sbjct: 301 RYENAIKYSPESVNKTIRNALIEEKQKYEAESLAESLRAHVEHLEAMDDSDATEASSEDE 360

Query: 178 VQREKHNIKSEQAKS 222
            + E++   S Q+K+
Sbjct: 361 SEDEEYYSSSLQSKT 375


>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 388 LXLLNTYSRFGTTYNTLYTVKWGELGHFPNPTLISNKIMV*WFREFKFVY 537
           L L+  Y++F  +YNT+Y  K   L H+ N + ++  I V   REF+  +
Sbjct: 205 LYLIILYTKFTVSYNTIYAFK---LLHYSN-SFVNPIIFVIKMREFRAAF 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,562,450
Number of Sequences: 59808
Number of extensions: 267053
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)