Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0604
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.90 
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    25   8.4  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 577 RFLAIKSLLKSDEP*YDLFEKHPLRISKCL 488
           R LA+K L   D+  +D  E +PL +SK L
Sbjct: 855 RLLAVKVLFTQDQAWFDQIENYPLVLSKIL 884


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 523 FEKHPLRISKCLRTTNFAR*MNLRKMRHSI 434
           FEK  L + K  RT+N++R M++R+ R  +
Sbjct: 230 FEKQLLELRKRTRTSNYSR-MSIREKRKHV 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,386
Number of Sequences: 5004
Number of extensions: 61932
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)