Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0604
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               31   0.96 
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   30   2.2  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   30   2.2  
SB_41859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)                 28   8.9  

>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = +1

Query: 424 RLKILNASFSVSSFTLRNLLFVNISKFEGDVSRISHIMVHHFLTTTL*LKIFNYNSTRST 603
           RL+    SFSV S + R +  +NI   + D+ R S +  HH   T L   +  YN T ST
Sbjct: 215 RLESSKPSFSVKSVSFRKIKSINIDTLKNDL-RSSEL--HHSPKTDLNGIVKKYNQTLST 271


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 679  LIQLVPLG*IYLLINLLPQTNLILYKYFW 593
            +I LV +G +YLLI  + +   + +KYFW
Sbjct: 2983 IIVLVIIGSLYLLIKRIYKQRTLFFKYFW 3011


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 18   RRTGRYHHPVLF---LP*SSNAFRFERWGSRCNYTEILEPI 131
            R + RYHHP+     +P     +RF++W   C      EPI
Sbjct: 1112 RISSRYHHPIFVTKSIPLRKITYRFDQWALLCVVQRPEEPI 1152


>SB_41859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 478 LLFVNISKFEGDVSRISHIMV-HHFLTTTL*LKIFNYNSTRSTYKVL 615
           ++ +N+ K   + +R + +M+ +H   TT  LK+F Y    +TYK L
Sbjct: 25  IVAINLLKLAREAARDNDVMMQYHINNTTKCLKVFAYMMGSATYKSL 71


>SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)
          Length = 1073

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 414  LLRTSKNIECLIFRKFIHLAKFVVRKHFEIRRGCFSNKSYYGSSL 548
            L++  K+   +IF   +HL +  +R   +IR+ CF N+S Y   L
Sbjct: 938  LVKLVKDPRAIIFTMDLHL-ELPLRLLNDIRKHCFQNRSVYAPVL 981


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,417,239
Number of Sequences: 59808
Number of extensions: 405001
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)