Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0604
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical
           protein F09F7.4b protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +3

Query: 159 SYHSNSDDELVMLKA------CLQNDLH*YLIRHFLSTEFGKRCN*KKSFFHVILVL 311
           +++S+SD +LV+LK       C   D+   ++R F  +E GK C   K FF    +L
Sbjct: 49  AWNSSSDVDLVILKGSGDKAFCAGGDVL-AVVRSFKDSESGKECTMHKDFFREEYIL 104


>U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical
           protein F09F7.4a protein.
          Length = 386

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +3

Query: 159 SYHSNSDDELVMLKA------CLQNDLH*YLIRHFLSTEFGKRCN*KKSFFHVILVL 311
           +++S+SD +LV+LK       C   D+   ++R F  +E GK C   K FF    +L
Sbjct: 72  AWNSSSDVDLVILKGSGDKAFCAGGDVL-AVVRSFKDSESGKECTMHKDFFREEYIL 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,436
Number of Sequences: 27780
Number of extensions: 339339
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)