Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0603
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   1.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   3.6  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 VFVPDEVDFTRRQPVL 177
           VFVPD V F   +P+L
Sbjct: 140 VFVPDYVFFVENEPIL 155


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 218 SNKIRRQLIERRAHKTGWRRVKSTSSGTKTGP 123
           SN+  R LI+RR H        +T    +T P
Sbjct: 266 SNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTP 297


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = -2

Query: 255 FSHTMFNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLN 103
           +S T+ N+  +      +  ++   T DW   ++ D    E W   S D++
Sbjct: 189 YSQTIDNSYQFCDNLQYSFDNQCSGTIDWALPKQEDCFYQEGWNGQSFDVS 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,848
Number of Sequences: 336
Number of extensions: 3258
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)