Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0603
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    27   2.2  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   2.9  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   3.8  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    26   3.8  
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   6.7  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   8.8  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   8.8  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   8.8  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   8.8  

>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 267 PCGTFSHTMFNNRHWV 220
           PCGT S+     RHW+
Sbjct: 206 PCGTVSYIKMEKRHWI 221


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 180 TQDWLAAREIDFIRHEDWPSSSPD 109
           T ++L   +IDF+ H+D P +S D
Sbjct: 171 TPEFLEEHKIDFVAHDDIPYASDD 194


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 240  FNNRHWVFQQDSAPAHRAKSTQDW 169
            FNN +W  ++++  AH A    +W
Sbjct: 1280 FNNEYWKIREEAGEAHLAGKEFEW 1303


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 126 ASLRAG*SRFHAPPASLVCSSLYELAP 206
           A L A  +R HA P  +VCS +Y+L+P
Sbjct: 293 AQLVAQAARHHATPV-VVCSGIYKLSP 318


>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 171

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 78 HLEEKACSNPHPNLESLKTSLIK 10
          HLEE    NP+ NL+ L+  +I+
Sbjct: 10 HLEESFLKNPNDNLKELENIIIE 32


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 231 RHWVFQQDSAPAHRAKST-QDWLAAREIDFIRHEDWPSSSPD 109
           ++WV Q  S  + +   T   W+   E+D   +EDW     D
Sbjct: 67  KNWVRQPFSISSRKDDFTLHHWVLKSEVDSEAYEDWNKDETD 108


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = +1

Query: 442 VHLIILFVVA------LFYGKNFFIRKKISRYFFSAYRFQQSAGISSVSRFIRRAFKRC 600
           VHL +LF+V            N  +R+K      S    +++  + + +R I RAF  C
Sbjct: 115 VHLPVLFIVCKDLRFLAINAHNAMLRRKQQLKVISVDESEENEQLEATARLINRAFTIC 173


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 417 CSLLHYCVRXPYHFVCCSSL 476
           C  L +C+   YH   CSSL
Sbjct: 36  CICLRWCISKEYHEFTCSSL 55


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 421 RFFTTVCVHLIILFVVALFYGK 486
           RFFTT  + ++++ ++ + Y K
Sbjct: 191 RFFTTAIIAILVILILLVLYSK 212


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -2

Query: 498 DEKIFPVEESYNKQNDKVXAHSSEEASNRIPACPTRSFSILAHGM 364
           ++ +FP +E   K + K     S   +      P + F+++ HG+
Sbjct: 124 EDPVFPKKEKIYKADYKTSIQRSRVLAEFFAKVPEKVFAVVTHGV 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,881
Number of Sequences: 5004
Number of extensions: 56372
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)