Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0603
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447           31   0.97 
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322...    29   3.0  
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           28   5.2  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    28   5.2  
01_05_0470 + 22531210-22531530,22532423-22532594,22532685-225328...    28   6.9  
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    27   9.1  
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193     27   9.1  

>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
          Length = 420

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGT 135
           C I G G+  +   Q+  RR HK  WR VK  ++ T
Sbjct: 33  CEICGQGFQREQNLQM-HRRRHKVPWRLVKRPAAAT 67


>03_06_0124 -
           31830797-31831371,31831510-31831532,31832143-31832271,
           31833287-31834842
          Length = 760

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
 Frame = -2

Query: 180 TQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEE--------KACSNPHPNLESLK 25
           +++WLA R +DFI   D    S  ++P   +   HLEE        K C NP P+   L 
Sbjct: 604 SEEWLA-RTLDFIDAHDKEGLSNIVDPSLVVDEDHLEEVWAVSIVAKTCLNPKPSRRPLA 662

Query: 24  TSLIK 10
             ++K
Sbjct: 663 RYILK 667


>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 168 LAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKACSNPHPNLESLKTSLIKLVP 1
           LAA+ + ++ H         +   D  IW     +  S+PH  L SLK S +K+ P
Sbjct: 241 LAAQSLGYLLHSKRLDEWESVKDND--IWNESTLEDASSPHHVLASLKLSYVKMQP 294


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 36  PN*DEDL--STPFPPSVAISCNLTDSNLDWRRASL 134
           PN D+DL  STP  P  ++SC+ T S L  R  SL
Sbjct: 137 PN-DDDLCPSTPLSPMSSVSCSSTASTLVTRSCSL 170


>01_05_0470 +
           22531210-22531530,22532423-22532594,22532685-22532820,
           22532913-22533126,22533295-22533438,22533528-22533635,
           22533724-22533820,22533904-22534035,22534188-22534320,
           22534439-22534604
          Length = 540

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 480 REKFFHPKKDFPIFFFRVPLSTKR 551
           ++KF HP++  P F + +P+S+ R
Sbjct: 302 KDKFSHPEQGNPTFLYAMPMSSTR 325


>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 411 IPACPTRSFSILAHGMAGSFLLGLNRGTF 325
           I  C    ++I   G  GSFLLGLN+ T+
Sbjct: 163 IQTCAVACYTIGYGGGFGSFLLGLNKKTY 191


>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
          Length = 476

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWR-RVKSTSSGTKTGPPP 117
           C I G G+      QL  RR H   W+ R +  + G   G PP
Sbjct: 83  CEICGKGFQRDQNLQL-HRRGHNLPWKLRQRGGAGGGGGGEPP 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,046
Number of Sequences: 37544
Number of extensions: 375149
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)