Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0603
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                 50   1e-06
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             50   2e-06
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                  50   2e-06
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           49   3e-06
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)                   46   3e-05
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10)                  33   0.14 
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_36050| Best HMM Match : HLH (HMM E-Value=0.004)                     28   5.3  
SB_2201| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  
SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)                    27   9.3  
SB_28518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 254

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 219 FQQDSAPAHRAKSTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYMIWQHLEEKACSN 52
           FQQD A  H A  T  WL  R E   I      +W   SPDLNP D+ +W  L++     
Sbjct: 51  FQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAQHSPDLNPPDFYLWGFLKDNVYQG 110

Query: 51  PHPNLESLKTSL 16
               +E LKT++
Sbjct: 111 NPQTIEKLKTAI 122


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 219 FQQDSAPAHRAKSTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYMIWQHLEEKACSN 52
           FQQD A  H A  T  WL  R E   I      +W   SPDLNP D+ +W  L++     
Sbjct: 275 FQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQG 334

Query: 51  PHPNLESLKTSL 16
               +E LKT++
Sbjct: 335 NPQTIEKLKTAI 346


>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 219 FQQDSAPAHRAKSTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYMIWQHLEEKACSN 52
           FQQD A  H A  T  WL  R E   I      +W   SPDLNP D+ +W  L++     
Sbjct: 51  FQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQG 110

Query: 51  PHPNLESLKTSL 16
               +E LKT++
Sbjct: 111 NPQTIEKLKTAI 122


>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 219 FQQDSAPAHRAKSTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYMIWQHLEEKACSN 52
           FQQD A  H A  T  WL  R E   I      +W   SPDLNP D+ +W  L++     
Sbjct: 51  FQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQG 110

Query: 51  PHPNLESLKTSL 16
               +E LKT++
Sbjct: 111 NPQTIEKLKTAI 122


>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 153

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 219 FQQDSAPAHRAKSTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYMIWQHLEEKACSN 52
           FQQD A  H A  T  WL  R E   I      +W   SPDLNP D+ +W  L++     
Sbjct: 51  FQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWVPHSPDLNPPDFYLWGFLKDNVYQG 110

Query: 51  PHPNLESLKTSL 16
               +E LKT++
Sbjct: 111 NPQTIEKLKTAI 122


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 219 FQQDSAPAHRAKSTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYMIWQHLEEKACSN 52
           FQQD A  H A  T  WL  R E   I      +W   SPDLNP D+ +W  L++     
Sbjct: 660 FQQDGATPHTANETIAWLRQRFEGRLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQG 719

Query: 51  PHPNLESLKTSL 16
               +E LKT++
Sbjct: 720 NPQTIEELKTAI 731


>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
          Length = 267

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 213 QDSAPAHRAKSTQDWLAAR-EIDFIRHE---DWPSSSPDLNPLDYMIWQHLEEKACSNPH 46
           QD A  H A  T  WL  R E   I      +W   SPDLNP D+ +W  L++       
Sbjct: 1   QDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQGNP 60

Query: 45  PNLESLKTSL 16
             +E LKT++
Sbjct: 61  QTIEKLKTAI 70


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -2

Query: 237 NNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYMIWQHLEEKAC 58
           N R  +F QD APAH AK++QDW    +   + H    +S+P  N     +W  ++E+  
Sbjct: 162 NKRSMLFVQDGAPAHTAKASQDWCKKNQNGRLTH---LTSNPIEN-----LWSIIDEETY 213

Query: 57  SNPHP-NLESLKTSLIK 10
            +P P  + SLK+   K
Sbjct: 214 RDPQPRTMTSLKSRFKK 230


>SB_19248| Best HMM Match : HECT (HMM E-Value=7.2e-10)
          Length = 279

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 99  LDYMIWQHLEEKACSNPHPNLESLKTS 19
           LD + WQ LE+K C +P   +E+LK S
Sbjct: 225 LDLITWQELEKKVCGDPEITVEALKKS 251


>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGTKTGPPPVQI 108
           C I    Y + IRR  I   ++K+G RR    S+  K+G  P  I
Sbjct: 567 CDINSAPYKSGIRRCDINSASYKSGIRRCDINSASYKSGIRPCDI 611



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGTKTG 126
           C I    Y + IRR  I   ++K+G RR    S+  K+G
Sbjct: 525 CDINSASYKSGIRRCDINSASYKSGIRRCDINSASYKSG 563



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGTKTG 126
           C I    Y + IRR  I    +K+G RR    S+  K+G
Sbjct: 497 CDINSASYKSGIRRCDINSAPYKSGIRRCDINSASYKSG 535



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGTKTG 126
           C I    Y + IRR  I   ++K+G RR    S+  K+G
Sbjct: 511 CDINSAPYKSGIRRCDINSASYKSGIRRCDINSASYKSG 549



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGTKTG 126
           C I    Y + IRR  I   ++K+G RR    S+  K+G
Sbjct: 539 CDINSASYKSGIRRCDINSASYKSGIRRCDINSAPYKSG 577



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 242 CSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGTKTG 126
           C I    Y + IRR  I    +K+G RR    S+  K+G
Sbjct: 553 CDINSASYKSGIRRCDINSAPYKSGIRRCDINSASYKSG 591


>SB_36050| Best HMM Match : HLH (HMM E-Value=0.004)
          Length = 141

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 351 RNSQPYHERGWKMTSLDTREYGCSLL 428
           RNS PY   GWK TS   R+  C+++
Sbjct: 93  RNSIPYSRTGWKTTS-HARKTSCTII 117


>SB_2201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 426 LHYCVRXPYHFVCCS--SLLREKFFHPKKDF 512
           L+  V+ P  F+  S  S+L+E F HP KDF
Sbjct: 52  LNEVVKNPPEFIYASAESVLQEGFLHPLKDF 82


>SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)
          Length = 238

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 415 VARFFTTVCVHLIILFVVALFYGKNFF 495
           +ARF    C+ L+ILF +    G++F+
Sbjct: 1   MARFHVYFCISLLILFSIQTLAGRDFY 27


>SB_28518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 484 KNFFIRKKISRYFFSAYRFQQSAGISSV 567
           +  F+R   S +FFS+Y  +  AG+S V
Sbjct: 42  RRLFVRSVFSSFFFSSYFPENYAGVSGV 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,356
Number of Sequences: 59808
Number of extensions: 422104
Number of successful extensions: 903
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)